| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157961683
Identifier: 157961683
GI number: 157961683
Start: 2263272
End: 2263901
Strand: Direct
Name: 157961683
Synonym: Spea_1859
Alternate gene names: NA
Gene position: 2263272-2263901 (Clockwise)
Preceding gene: 157961680
Following gene: 157961684
Centisome position: 43.74
GC content: 52.54
Gene sequence:
>630_bases ATGGCGAAACAAATGGCGTACAATGAGGAGACACAGAAGGCGGTTCGACGGGTTTGGGATGAGTTCAAGAGTGAGACAGG GACGAGCCAAGCAAAAGCGGCCAAAGCCCTCGGCATTAACCAGTCGGCGTTAAGTCAGTACCTAAGAGGGGAGATCCCCC TTAATACAGACTTCTTGGCTAAGTTTGCAAAACTAACAAAGTCCGACTTAGACTCCTTGGGAATAACTCCCGCCACCGTA GGGGCGATGCCGCTAGAACTAAGGTACACGCTGTCAGGGCGTAGGCTACGTGACACCAGTGCGCTGGTACCCTCGCCGAC CTCATTTGAGGGCTGTTTCGGGATAGTAGTCGATTACGATGACTTCGCCCTACCAAGAGACAGCATTATGATTGTCGATG AGACAACAACAATCAAAGAATATGACTCGGTTATCCTAGTCTCACGTGATGACCGAATGATCAACGGCACCATCAGGTAC ACCCCAGATGGATGGGAGGTTCTTGAGCCTCACGCAAGAGGGGCGCGGCGCTTCGTTGTGAGAGGAGACGACACTATTTA CAGATTAGGGGGCGCGTTCCTACCCGAAAGGCATGGGCGGACTTTCGAGCAAAAACCTGCACGGGGTTAG
Upstream 100 bases:
>100_bases AAGCAAAATATTACTGACCTGTACATGAGTACATATAGCTGCGCATTAATTTGACACATAAACAGTGTCCCTGTTACAGT GAGTAATAGAGTTAATAATC
Downstream 100 bases:
>100_bases TACTCCGTTTTTTGGGTTAGCGTTTAAGTGGTAATCCTGCTAGTGGTGCTAGTCCTTATACTATCATCTCTGTTGCCTAT CAAAACGAAATATGAATAAA
Product: XRE family transcriptional regulator
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 209; Mature: 208
Protein sequence:
>209_residues MAKQMAYNEETQKAVRRVWDEFKSETGTSQAKAAKALGINQSALSQYLRGEIPLNTDFLAKFAKLTKSDLDSLGITPATV GAMPLELRYTLSGRRLRDTSALVPSPTSFEGCFGIVVDYDDFALPRDSIMIVDETTTIKEYDSVILVSRDDRMINGTIRY TPDGWEVLEPHARGARRFVVRGDDTIYRLGGAFLPERHGRTFEQKPARG
Sequences:
>Translated_209_residues MAKQMAYNEETQKAVRRVWDEFKSETGTSQAKAAKALGINQSALSQYLRGEIPLNTDFLAKFAKLTKSDLDSLGITPATV GAMPLELRYTLSGRRLRDTSALVPSPTSFEGCFGIVVDYDDFALPRDSIMIVDETTTIKEYDSVILVSRDDRMINGTIRY TPDGWEVLEPHARGARRFVVRGDDTIYRLGGAFLPERHGRTFEQKPARG >Mature_208_residues AKQMAYNEETQKAVRRVWDEFKSETGTSQAKAAKALGINQSALSQYLRGEIPLNTDFLAKFAKLTKSDLDSLGITPATVG AMPLELRYTLSGRRLRDTSALVPSPTSFEGCFGIVVDYDDFALPRDSIMIVDETTTIKEYDSVILVSRDDRMINGTIRYT PDGWEVLEPHARGARRFVVRGDDTIYRLGGAFLPERHGRTFEQKPARG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23371; Mature: 23240
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: PS50943 HTH_CROC1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKQMAYNEETQKAVRRVWDEFKSETGTSQAKAAKALGINQSALSQYLRGEIPLNTDFLA CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHH KFAKLTKSDLDSLGITPATVGAMPLELRYTLSGRRLRDTSALVPSPTSFEGCFGIVVDYD HHHHHHHHHHHHCCCCCHHHCCCEEEEEEEECCCEECCCCCCCCCCCCCCCEEEEEEECC DFALPRDSIMIVDETTTIKEYDSVILVSRDDRMINGTIRYTPDGWEVLEPHARGARRFVV CCCCCCCCEEEEECCCCHHCCCCEEEEECCCEEEECEEEECCCCHHEECCCCCCCEEEEE RGDDTIYRLGGAFLPERHGRTFEQKPARG ECCCEEEECCCCCCCHHCCCCCCCCCCCC >Mature Secondary Structure AKQMAYNEETQKAVRRVWDEFKSETGTSQAKAAKALGINQSALSQYLRGEIPLNTDFLA CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHH KFAKLTKSDLDSLGITPATVGAMPLELRYTLSGRRLRDTSALVPSPTSFEGCFGIVVDYD HHHHHHHHHHHHCCCCCHHHCCCEEEEEEEECCCEECCCCCCCCCCCCCCCEEEEEEECC DFALPRDSIMIVDETTTIKEYDSVILVSRDDRMINGTIRYTPDGWEVLEPHARGARRFVV CCCCCCCCEEEEECCCCHHCCCCEEEEECCCEEEECEEEECCCCHHEECCCCCCCEEEEE RGDDTIYRLGGAFLPERHGRTFEQKPARG ECCCEEEECCCCCCCHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA