| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
Click here to switch to the map view.
The map label for this gene is cctA [H]
Identifier: 157961630
GI number: 157961630
Start: 2205206
End: 2205580
Strand: Direct
Name: cctA [H]
Synonym: Spea_1806
Alternate gene names: 157961630
Gene position: 2205206-2205580 (Clockwise)
Preceding gene: 157961629
Following gene: 157961631
Centisome position: 42.62
GC content: 48.27
Gene sequence:
>375_bases ATGCGAACATCAAATGAGGATACAATTGTGAGCAATAAACTACTAAGTGCAATTTTTGGTGCGGCTTTCGCAGCACTCGC TTTATCACCAGCAGCTTTCGCAGAAGGCCAAGAGCTGGCAGAAATGCATGCCGAGATGGATGGCTGTGAAGCGTGTCACG CTGATGGGGAACCATCTGCAGACGGTGAGTACGAATTCGAACAGTGCCAATCTTGTCACGGTACATTGGCGGAAATGGAC GCAGTTCACCAACCACACGACGGCATGCTAATGTGTGCTGACTGTCATGCTCCACATGAAATGAACGTAGGTGATAAGCC TACTTGTGATAGCTGTCATGATGACGGCCGTACTGCAGATTCAGTACTTAAGTAA
Upstream 100 bases:
>100_bases AAATTAGTTGCGGATTAGTTAATGCTTAGCTAAATTAACTTAAGTCGTGCTAAAAATATGGTTTGCAAGATGAAAACCAC CTGACATATAGGTTTTCACT
Downstream 100 bases:
>100_bases TTTGAGTTAACTCAAATTACTGAAATGAGCCAGCCAATGTGCTGGCTTTTTTGTGTTTTAAAAGCCCAGTTTGCATAAAA GTTTAGCAATCAGTGGTTAG
Product: cytochrome c3
Products: NA
Alternate protein names: Cytochrome c3 [H]
Number of amino acids: Translated: 124; Mature: 124
Protein sequence:
>124_residues MRTSNEDTIVSNKLLSAIFGAAFAALALSPAAFAEGQELAEMHAEMDGCEACHADGEPSADGEYEFEQCQSCHGTLAEMD AVHQPHDGMLMCADCHAPHEMNVGDKPTCDSCHDDGRTADSVLK
Sequences:
>Translated_124_residues MRTSNEDTIVSNKLLSAIFGAAFAALALSPAAFAEGQELAEMHAEMDGCEACHADGEPSADGEYEFEQCQSCHGTLAEMD AVHQPHDGMLMCADCHAPHEMNVGDKPTCDSCHDDGRTADSVLK >Mature_124_residues MRTSNEDTIVSNKLLSAIFGAAFAALALSPAAFAEGQELAEMHAEMDGCEACHADGEPSADGEYEFEQCQSCHGTLAEMD AVHQPHDGMLMCADCHAPHEMNVGDKPTCDSCHDDGRTADSVLK
Specific function: Transfers electrons to ferredoxin III [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011031 - InterPro: IPR012286 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13173; Mature: 13173
Theoretical pI: Translated: 4.09; Mature: 4.09
Prosite motif: PS51008 MULTIHEME_CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.5 %Cys (Translated Protein) 5.6 %Met (Translated Protein) 12.1 %Cys+Met (Translated Protein) 6.5 %Cys (Mature Protein) 5.6 %Met (Mature Protein) 12.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTSNEDTIVSNKLLSAIFGAAFAALALSPAAFAEGQELAEMHAEMDGCEACHADGEPSA CCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCC DGEYEFEQCQSCHGTLAEMDAVHQPHDGMLMCADCHAPHEMNVGDKPTCDSCHDDGRTAD CCCCCHHHHHHHHCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHH SVLK HHCC >Mature Secondary Structure MRTSNEDTIVSNKLLSAIFGAAFAALALSPAAFAEGQELAEMHAEMDGCEACHADGEPSA CCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCC DGEYEFEQCQSCHGTLAEMDAVHQPHDGMLMCADCHAPHEMNVGDKPTCDSCHDDGRTAD CCCCCHHHHHHHHCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHH SVLK HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11231004 [H]