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The map label for this gene is ybcM [H]

Identifier: 157961075

GI number: 157961075

Start: 1520438

End: 1521247

Strand: Direct

Name: ybcM [H]

Synonym: Spea_1247

Alternate gene names: 157961075

Gene position: 1520438-1521247 (Clockwise)

Preceding gene: 157961074

Following gene: 157961076

Centisome position: 29.38

GC content: 44.44

Gene sequence:

>810_bases
GTGACACCACTGGTTAAGATTGAACGTTTCTATGGACAGAAGTCACAGCCTTTACGCAATGTACCTGTGTATACACCGAG
TATTATTGCGGTCACATCTGGCGTGAAAGCCCTGCTTTGGCAGGGAGAAACCCTAGTATTCGATCCTAACCATTGGCTGC
TTGCCTCTTCCACTCAAGCGCTCACCTTTGTTAATGAGCCTTACCAAAGTAAGTTTCAGTCGATTCAATTGTCATTCTTA
TCGCCCCCCTCTGAATGGGTTTTAAAGCTGCACGCTAAGTCAGAGATAAGTGATTCGACCTTCTTGAGCTCACCAAGCCT
CAAGGTAAACGACAGCCTAAACTTTGCGTTTTTACAGCTTATCGCGATGTCAGAGCAAAGTTTAAGTTCAGCTGTGCAGC
AGTGTTACTTAGATGCTTTCTATCTACAGCTCAATGAGCAAGGAGCGCTATCTAGACTGTTTGAGGGAGACTTTCTGTCT
CTAAGAGAAAAGGTGAGCCGCTATCTGTCAGCCGACCCAGCTGCCAATCATACGATTGATAATACCTGTAGCCACTTTGC
GATGAGCCAAGCTACCTTTATGCGTCACCTAAGCAAAGAGGGAACCTCATTTAGAGTGATTTTAGCTGAAGTTAGAATGC
TGTGTGCCATCGGTATTATGCAGTCGATTTCGGCTCGAAACGCTGTCCCACTGTCACAACTTGAGTTAGCGATACGTTGT
GGTTATCAATCAGAATCACGTTTTAGCCAACGTTTTAAAACACAGTTTGGGATCTCACTAAAGCAATATATGAAGACAAT
CAGCGATTAA

Upstream 100 bases:

>100_bases
GATAAAGCTGTACTAACAGCAACTTATGTGCGTTAGCCATATACAGTGTAGTTGAAATAGTTTGTAGTAAATAGATGTGC
TATTGAGGGAGAGAGTAAGA

Downstream 100 bases:

>100_bases
GTCCTTATTTGAATAGTAGTTTAAATAGTGGTTTAAATCGGGACGATGGCAAGCCATGTTTTCAACGAAAAATATTGCAG
AGCTAGCTTAGTCACGGCCT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MTPLVKIERFYGQKSQPLRNVPVYTPSIIAVTSGVKALLWQGETLVFDPNHWLLASSTQALTFVNEPYQSKFQSIQLSFL
SPPSEWVLKLHAKSEISDSTFLSSPSLKVNDSLNFAFLQLIAMSEQSLSSAVQQCYLDAFYLQLNEQGALSRLFEGDFLS
LREKVSRYLSADPAANHTIDNTCSHFAMSQATFMRHLSKEGTSFRVILAEVRMLCAIGIMQSISARNAVPLSQLELAIRC
GYQSESRFSQRFKTQFGISLKQYMKTISD

Sequences:

>Translated_269_residues
MTPLVKIERFYGQKSQPLRNVPVYTPSIIAVTSGVKALLWQGETLVFDPNHWLLASSTQALTFVNEPYQSKFQSIQLSFL
SPPSEWVLKLHAKSEISDSTFLSSPSLKVNDSLNFAFLQLIAMSEQSLSSAVQQCYLDAFYLQLNEQGALSRLFEGDFLS
LREKVSRYLSADPAANHTIDNTCSHFAMSQATFMRHLSKEGTSFRVILAEVRMLCAIGIMQSISARNAVPLSQLELAIRC
GYQSESRFSQRFKTQFGISLKQYMKTISD
>Mature_268_residues
TPLVKIERFYGQKSQPLRNVPVYTPSIIAVTSGVKALLWQGETLVFDPNHWLLASSTQALTFVNEPYQSKFQSIQLSFLS
PPSEWVLKLHAKSEISDSTFLSSPSLKVNDSLNFAFLQLIAMSEQSLSSAVQQCYLDAFYLQLNEQGALSRLFEGDFLSL
REKVSRYLSADPAANHTIDNTCSHFAMSQATFMRHLSKEGTSFRVILAEVRMLCAIGIMQSISARNAVPLSQLELAIRCG
YQSESRFSQRFKTQFGISLKQYMKTISD

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786758, Length=262, Percent_Identity=24.8091603053435, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30248; Mature: 30117

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPLVKIERFYGQKSQPLRNVPVYTPSIIAVTSGVKALLWQGETLVFDPNHWLLASSTQA
CCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCHHHHHCCCCEEEECCCCEEEECCCCE
LTFVNEPYQSKFQSIQLSFLSPPSEWVLKLHAKSEISDSTFLSSPSLKVNDSLNFAFLQL
EEEECCHHHHHHHHEEEEECCCCHHHHEEEHHHCCCCCCCCCCCCCEEECCCCHHHHHHH
IAMSEQSLSSAVQQCYLDAFYLQLNEQGALSRLFEGDFLSLREKVSRYLSADPAANHTID
HHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHH
NTCSHFAMSQATFMRHLSKEGTSFRVILAEVRMLCAIGIMQSISARNAVPLSQLELAIRC
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
GYQSESRFSQRFKTQFGISLKQYMKTISD
CCCCHHHHHHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure 
TPLVKIERFYGQKSQPLRNVPVYTPSIIAVTSGVKALLWQGETLVFDPNHWLLASSTQA
CCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCHHHHHCCCCEEEECCCCEEEECCCCE
LTFVNEPYQSKFQSIQLSFLSPPSEWVLKLHAKSEISDSTFLSSPSLKVNDSLNFAFLQL
EEEECCHHHHHHHHEEEEECCCCHHHHEEEHHHCCCCCCCCCCCCCEEECCCCHHHHHHH
IAMSEQSLSSAVQQCYLDAFYLQLNEQGALSRLFEGDFLSLREKVSRYLSADPAANHTID
HHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHH
NTCSHFAMSQATFMRHLSKEGTSFRVILAEVRMLCAIGIMQSISARNAVPLSQLELAIRC
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
GYQSESRFSQRFKTQFGISLKQYMKTISD
CCCCHHHHHHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]