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The map label for this gene is ppdD [C]

Identifier: 157960919

GI number: 157960919

Start: 1321347

End: 1321739

Strand: Direct

Name: ppdD [C]

Synonym: Spea_1091

Alternate gene names: 157960919

Gene position: 1321347-1321739 (Clockwise)

Preceding gene: 157960918

Following gene: 157960920

Centisome position: 25.54

GC content: 39.19

Gene sequence:

>393_bases
ATGTTTAATGCTAAAGGTTTTACACTTATTGAGTTAATGATTACTGTTGCAATAATAGGGATCTTGGCATCAATCGCATA
CCCCTCTTATATCGACTATATTCTTCAAGCCGGACGTTCTGATGCGAAAGTGATACTACTAGAGGCAGCTAATAAACAAG
AGCAGCTATATCTAGATAGTCGAACCTATACCGTGAATATGGCCACTTTGGGTTACTCTGCAAGCCCAGCTTTGAGTGAA
AATGGTTACTATAAAATCAGTAGTGAAGTCCCTGAAAAAGGACAGTTTAAATTAACTGCTACGGCGACTGGCGATCATGC
TTATAGAGACCAAGTCTGTAATACAATGACGATTAATGAGTCAGGAGTTAAGACACCATTGGAGTGTTGGTAA

Upstream 100 bases:

>100_bases
GTCCTAAACCACCAGATTGTCAAAATGGTGATGATAAGTGTGTTGGATCGGCTCTTGGGATTAACCGAATTTACTACCAT
GCAAATGACTAAGGTATTTT

Downstream 100 bases:

>100_bases
TGAATAAAATCATATGTTGCTTGTCTTTAATATTGTTATCGAGTCCAACTGTGATGGCAAAGACAAAAGAGATGAAAGAC
TATAAATGCTTTCTTAAAAC

Product: methylation site containing protein

Products: NA

Alternate protein names: Methylation Site Containing Protein; Type IV Pilin; Type 4 Fimbrial Biogenesis Protein PilE; Fimbrial Protein Pilin; Type 4 Fimbrial Biogenesis Transmembrane Protein; Methylation; Pilus Assembly Protein; Tfp Pilus Assembly Protein PilE; Type IV Fimbrial Biogenesis Protein; General Secretion Pathway Protein H; Type 4 Fimbrial Biogenesis Signal Peptide Protein; Tfp Pilus Assembly Protein PilE-Like Protein; Fimbrial Protein; Type-IV Pilin; Type IV Pilus Biogenesis Protein; Type IV Pilin PilE; Protein Involved In Methylation; Type IV Pilus Assembly Protein PilE; Prepilin-Type Cleavage/Methylation; Pilus Assembly Protein PilE; Type IV Pilin Pile Protein; Type IV Pilus Assembly Protein

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MFNAKGFTLIELMITVAIIGILASIAYPSYIDYILQAGRSDAKVILLEAANKQEQLYLDSRTYTVNMATLGYSASPALSE
NGYYKISSEVPEKGQFKLTATATGDHAYRDQVCNTMTINESGVKTPLECW

Sequences:

>Translated_130_residues
MFNAKGFTLIELMITVAIIGILASIAYPSYIDYILQAGRSDAKVILLEAANKQEQLYLDSRTYTVNMATLGYSASPALSE
NGYYKISSEVPEKGQFKLTATATGDHAYRDQVCNTMTINESGVKTPLECW
>Mature_130_residues
MFNAKGFTLIELMITVAIIGILASIAYPSYIDYILQAGRSDAKVILLEAANKQEQLYLDSRTYTVNMATLGYSASPALSE
NGYYKISSEVPEKGQFKLTATATGDHAYRDQVCNTMTINESGVKTPLECW

Specific function: Not Yet Known. [C]

COG id: COG4968

COG function: function code NU; Tfp pilus assembly protein PilE

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14302; Mature: 14302

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNAKGFTLIELMITVAIIGILASIAYPSYIDYILQAGRSDAKVILLEAANKQEQLYLDS
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEECC
RTYTVNMATLGYSASPALSENGYYKISSEVPEKGQFKLTATATGDHAYRDQVCNTMTINE
CEEEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCHHHHHHCCEEEECC
SGVKTPLECW
CCCCCCCCCC
>Mature Secondary Structure
MFNAKGFTLIELMITVAIIGILASIAYPSYIDYILQAGRSDAKVILLEAANKQEQLYLDS
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEECC
RTYTVNMATLGYSASPALSENGYYKISSEVPEKGQFKLTATATGDHAYRDQVCNTMTINE
CEEEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCHHHHHHCCEEEECC
SGVKTPLECW
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA