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The map label for this gene is rimM [H]

Identifier: 157960878

GI number: 157960878

Start: 1272961

End: 1273491

Strand: Direct

Name: rimM [H]

Synonym: Spea_1050

Alternate gene names: 157960878

Gene position: 1272961-1273491 (Clockwise)

Preceding gene: 157960877

Following gene: 157960879

Centisome position: 24.6

GC content: 44.26

Gene sequence:

>531_bases
ATGAGTAGTAAACAAGAACCCGTCATCCTTGGCAAAATCGGTTCAAGTTATGGCATTAAAGGTTGGTTGAAGATCACTAC
CTATACCGACTCTGTTGAAGGTATCTTTGACTATTCACCTTGGCTTATTAAAGAACAAGGCGAATGGCGCGAGGTTAAGG
TCGCCCAGTGGCGTTTCCAAGGTAAAGCAGTTGTTGCTTGTCTTGAAGGCGTATCAACACGGGATGAGGCGCAAGCGCTT
ACAAATTGTGAGATTGCGGTGCCTGCTGATCAGATGCAAGATTTACCAGAAGATGAATTCTACTGGCGAGATCTTATCGG
CTGTGAAGTGATTAATACCAAAGGCTACAACATGGGTACAGTTCAGGAGATCGTGGAAACAGGATCGAATGACGTACTTC
TAGTTAAAGCAAACGCAAAAGATGGCTTTGGCAAAGCGGAACGTATGATTCCCTTTGTTACTGACCAGTTCATCCAAAAG
GTGGACTTGGCAGCAAAACAGATTTTAGTGGATTGGGATCCGGACTTTTAA

Upstream 100 bases:

>100_bases
AGCATTGGGTTGCTAACGGTGCTGCTACTACTGATCGTGTAGCAAAGTTGATCAAAGACGCTCGTAAAGCTGCTGCTTAA
TAGCGTTAAGGTATAGATTG

Downstream 100 bases:

>100_bases
GTCGAGGTACAACATATGTGGTTAGGGGTAGTAACCCTGTTTCCCGAGATGTTTCGTGCCGTAACAGACTTTGGTGTAAC
GGGTCGTGCAGTTAGTAAAG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MSSKQEPVILGKIGSSYGIKGWLKITTYTDSVEGIFDYSPWLIKEQGEWREVKVAQWRFQGKAVVACLEGVSTRDEAQAL
TNCEIAVPADQMQDLPEDEFYWRDLIGCEVINTKGYNMGTVQEIVETGSNDVLLVKANAKDGFGKAERMIPFVTDQFIQK
VDLAAKQILVDWDPDF

Sequences:

>Translated_176_residues
MSSKQEPVILGKIGSSYGIKGWLKITTYTDSVEGIFDYSPWLIKEQGEWREVKVAQWRFQGKAVVACLEGVSTRDEAQAL
TNCEIAVPADQMQDLPEDEFYWRDLIGCEVINTKGYNMGTVQEIVETGSNDVLLVKANAKDGFGKAERMIPFVTDQFIQK
VDLAAKQILVDWDPDF
>Mature_175_residues
SSKQEPVILGKIGSSYGIKGWLKITTYTDSVEGIFDYSPWLIKEQGEWREVKVAQWRFQGKAVVACLEGVSTRDEAQALT
NCEIAVPADQMQDLPEDEFYWRDLIGCEVINTKGYNMGTVQEIVETGSNDVLLVKANAKDGFGKAERMIPFVTDQFIQKV
DLAAKQILVDWDPDF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=171, Percent_Identity=50.2923976608187, Blast_Score=204, Evalue=3e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 19805; Mature: 19673

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKQEPVILGKIGSSYGIKGWLKITTYTDSVEGIFDYSPWLIKEQGEWREVKVAQWRFQ
CCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCEEECCCCEEEECCCCCCEEEEEEEEEC
GKAVVACLEGVSTRDEAQALTNCEIAVPADQMQDLPEDEFYWRDLIGCEVINTKGYNMGT
CCEEEEEHHCCCCCHHHHHHHCCEEEECHHHHHCCCCCHHHHHHHCCEEEECCCCCCCHH
VQEIVETGSNDVLLVKANAKDGFGKAERMIPFVTDQFIQKVDLAAKQILVDWDPDF
HHHHHHCCCCCEEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHEEEEECCCCC
>Mature Secondary Structure 
SSKQEPVILGKIGSSYGIKGWLKITTYTDSVEGIFDYSPWLIKEQGEWREVKVAQWRFQ
CCCCCCEEEEECCCCCCCCEEEEEEEECCCCCEEECCCCEEEECCCCCCEEEEEEEEEC
GKAVVACLEGVSTRDEAQALTNCEIAVPADQMQDLPEDEFYWRDLIGCEVINTKGYNMGT
CCEEEEEHHCCCCCHHHHHHHCCEEEECHHHHHCCCCCHHHHHHHCCEEEECCCCCCCHH
VQEIVETGSNDVLLVKANAKDGFGKAERMIPFVTDQFIQKVDLAAKQILVDWDPDF
HHHHHHCCCCCEEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA