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The map label for this gene is yhcC [H]

Identifier: 157960842

GI number: 157960842

Start: 1237298

End: 1238227

Strand: Direct

Name: yhcC [H]

Synonym: Spea_1014

Alternate gene names: 157960842

Gene position: 1237298-1238227 (Clockwise)

Preceding gene: 157960838

Following gene: 157960843

Centisome position: 23.91

GC content: 46.13

Gene sequence:

>930_bases
TTGGGACTGGATAGTTACGTAAATACCTTCGGCGGTGTGTGTAAGCAAAAATATGGCGAGCGGATCCGTAAGCTGACAAT
CGATGCAAAATTTACCTGCCCTAATCGTGATGGCACTTTGGGTAAGGGGGGGTGCACCTATTGCAATGTGGCATCCTTTA
GTCATGAGCATAAGACCGAGCTATCTATTCAAGAGCAACTGGCTCAAGGCAGAGAGCGATTACCCTCTAAATCGTCTAAG
TACATCGCTTATTTTCAGGCTTATACCAGTACATATGATGAGTACCTAGTATTAAAGCAAAAGTACGATGAGGCAATTCA
GGACAGCGATATTGTGGGCCTTTGTGTCGGTACTCGCCCTGATTGTGTTCCCAATGAGGTGCTAGAGTTATTAGTCGGCT
ATCAAAATGATGGTGTCGATGTCTGGTTAGAGCTTGGCTTGCAATCGGCTAATGATGCTACGCTGAAGAAGATCAATCGC
GGCCATGATTTTGCCGCTTATGAAGATACGGTTATCCGTGCCCGTAAGCTTGGCATAAAAGTATGTACCCACTTGATCTT
GGGATTACCGGGTGAAGCTCATGAGGATTATCTGCAAACACTTGATAAGGTATTGAGGGTTGGTGTTGATGGAATGAAGA
TACATCCACTGCACATTGTTGAAGGCAGCACCATGGCTAAAGCATGGCGCAATAATAAGATGAGTCTGCTTGAGCTAGAG
GATTATGCTTATAGCGTTGGTGAGTTGATCCGCCGAACTCCTAAAGAGGTAATTTTCCATCGAGTGACAGCTTATGCGAA
AAAGCCAATGCTGTTAGGGCCTGATTGGTGTGCTTATCGATGGAATGGGCTCGTCGCTATCGTTGATGATCTAGAAGCGA
AAGGCGGTCAAGGGGCTTATCTTGAGATAGGGCAAGAGCCCGCGGCGTAA

Upstream 100 bases:

>100_bases
GTATAACTGCTCGGTATTACGGTTATTTGAGCTAGCGCTAATTAATGATTTTTAGAACTGGTTAAAATAGCGCAAATTCT
TTGGCTAGGTGATATAGCAG

Downstream 100 bases:

>100_bases
CAAATTGAGCGGAAAACGTTCATTATTGGCTAATTAATCATGAGGCTTATAGTGACTTTGTTTAATCCGATGTTGTTAAA
TCGTTAAATTCGAGGGAATT

Product: putative radical SAM protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MGLDSYVNTFGGVCKQKYGERIRKLTIDAKFTCPNRDGTLGKGGCTYCNVASFSHEHKTELSIQEQLAQGRERLPSKSSK
YIAYFQAYTSTYDEYLVLKQKYDEAIQDSDIVGLCVGTRPDCVPNEVLELLVGYQNDGVDVWLELGLQSANDATLKKINR
GHDFAAYEDTVIRARKLGIKVCTHLILGLPGEAHEDYLQTLDKVLRVGVDGMKIHPLHIVEGSTMAKAWRNNKMSLLELE
DYAYSVGELIRRTPKEVIFHRVTAYAKKPMLLGPDWCAYRWNGLVAIVDDLEAKGGQGAYLEIGQEPAA

Sequences:

>Translated_309_residues
MGLDSYVNTFGGVCKQKYGERIRKLTIDAKFTCPNRDGTLGKGGCTYCNVASFSHEHKTELSIQEQLAQGRERLPSKSSK
YIAYFQAYTSTYDEYLVLKQKYDEAIQDSDIVGLCVGTRPDCVPNEVLELLVGYQNDGVDVWLELGLQSANDATLKKINR
GHDFAAYEDTVIRARKLGIKVCTHLILGLPGEAHEDYLQTLDKVLRVGVDGMKIHPLHIVEGSTMAKAWRNNKMSLLELE
DYAYSVGELIRRTPKEVIFHRVTAYAKKPMLLGPDWCAYRWNGLVAIVDDLEAKGGQGAYLEIGQEPAA
>Mature_308_residues
GLDSYVNTFGGVCKQKYGERIRKLTIDAKFTCPNRDGTLGKGGCTYCNVASFSHEHKTELSIQEQLAQGRERLPSKSSKY
IAYFQAYTSTYDEYLVLKQKYDEAIQDSDIVGLCVGTRPDCVPNEVLELLVGYQNDGVDVWLELGLQSANDATLKKINRG
HDFAAYEDTVIRARKLGIKVCTHLILGLPGEAHEDYLQTLDKVLRVGVDGMKIHPLHIVEGSTMAKAWRNNKMSLLELED
YAYSVGELIRRTPKEVIFHRVTAYAKKPMLLGPDWCAYRWNGLVAIVDDLEAKGGQGAYLEIGQEPAA

Specific function: Unknown

COG id: COG1242

COG function: function code R; Predicted Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0486 [H]

Homologues:

Organism=Escherichia coli, GI2367204, Length=301, Percent_Identity=55.1495016611296, Blast_Score=362, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005911
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 34532; Mature: 34401

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLDSYVNTFGGVCKQKYGERIRKLTIDAKFTCPNRDGTLGKGGCTYCNVASFSHEHKTE
CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHH
LSIQEQLAQGRERLPSKSSKYIAYFQAYTSTYDEYLVLKQKYDEAIQDSDIVGLCVGTRP
HHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
DCVPNEVLELLVGYQNDGVDVWLELGLQSANDATLKKINRGHDFAAYEDTVIRARKLGIK
CCCHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
VCTHLILGLPGEAHEDYLQTLDKVLRVGVDGMKIHPLHIVEGSTMAKAWRNNKMSLLELE
HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHCCCCEEEEHH
DYAYSVGELIRRTPKEVIFHRVTAYAKKPMLLGPDWCAYRWNGLVAIVDDLEAKGGQGAY
HHHHHHHHHHHHCHHHHHHHHHHHHHCCCCEECCCHHHHHHCCEEEEEECCCCCCCCCCE
LEIGQEPAA
EECCCCCCC
>Mature Secondary Structure 
GLDSYVNTFGGVCKQKYGERIRKLTIDAKFTCPNRDGTLGKGGCTYCNVASFSHEHKTE
CHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHH
LSIQEQLAQGRERLPSKSSKYIAYFQAYTSTYDEYLVLKQKYDEAIQDSDIVGLCVGTRP
HHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
DCVPNEVLELLVGYQNDGVDVWLELGLQSANDATLKKINRGHDFAAYEDTVIRARKLGIK
CCCHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
VCTHLILGLPGEAHEDYLQTLDKVLRVGVDGMKIHPLHIVEGSTMAKAWRNNKMSLLELE
HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHCCCCEEEEHH
DYAYSVGELIRRTPKEVIFHRVTAYAKKPMLLGPDWCAYRWNGLVAIVDDLEAKGGQGAY
HHHHHHHHHHHHCHHHHHHHHHHHHHCCCCEECCCHHHHHHCCEEEEEECCCCCCCCCCE
LEIGQEPAA
EECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]