| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157960719
Identifier: 157960719
GI number: 157960719
Start: 1087484
End: 1089016
Strand: Reverse
Name: 157960719
Synonym: Spea_0891
Alternate gene names: NA
Gene position: 1089016-1087484 (Counterclockwise)
Preceding gene: 157960720
Following gene: 157960715
Centisome position: 21.05
GC content: 47.36
Gene sequence:
>1533_bases ATGAGCGATTCGAACGATGCTTACGCAGATAACGACCTAAGGGAAGTTAAACAGCTGGGGATGTGGGCCTCTATCGCCAG CTTAAGTTATATATTCTGGATTGTCGGTGGCATGGAGCTGGTTGAGCGCATTGCCTACTACGGTGTGAAAGCCAGTGCCG GCCTCTATGCAAAAGCCCCAACATCTGAAGGTGGTTTAGGAATTAGCCTTAGCGATTACGGTATCATCATCGCTCTCTGG GCATTCATGCAGACCTTTATCCCTGTCTTTACCGGCGGGATCTCCGACCGTGTTGGGTATAAAGAAACCATCTTCGTCTC CACCATAATCAAGATTGCCGGCTATCTAGTGATGGCTTTCTTCCCTAGCTTTTACGGCTTCCTGTTCGGCGCCATACTGC TTGCAGGTGGTACCGGGGTATTTAAACCGGGGATCCAAGGCACCTTAGTCCTCTCCACAGGCAGACAAAACACCTCGATG GCATGGGGCATATTCTACCAAGTGGTCAATATTGGTGGTTTCCTAGGTCCGCTCGTGGCCGTGCATATGCGTCAGCTTTC TTGGGATAATGTCTTCTATGCTTGTGCGGCGATTATTTCGCTTAACTTCCTATTTTTGCTTGCCTATAAAGAGCCTGGTA AAGAAGAGCGTATGGAGCGCAACCGTAAGATTAAGGCTGGAGAGATCCACCAAGAAGCATTGTGGCGTGATGCGTTAAAC GAGCTGAAAAAGCCAGTTGTTATCTACTACATGCTAGTTTTTGCCGGATTCTGGTTCCTGTTTAACTCGTTATTTGACGT ATTACCTATTCATATTGCCGAGTGGGTCGATACCAGCGTGATTGTTACCTCGTTATTTGGTCCTGAGGGTACCTCAAATG GTATGTTCCAGTTCTGGCTAGGCCTCGATAATACCGGAACCAAGGTCATGCCTGAAGGCATGCTTAACCTTAACGCTGGT ATGATCATGACGAGCTGCTTCTTGGTGGCCGCATTAACTGCAAAGTACCGTATTACTACGGCTATGCTAGGTGGTTGCTT ACTTAGTATTTTCGCTTTCGTATTAATTGGCGCAACAAATACCGCATGGATGATGGTGTTAGCGATTGCCATGTTCTCTT TCGGCGAGATGATGATCAGCCCAAAGAAAAACGAGTTTATGGGTAACATTGCTCCAGAAGGTAAGAAGGCAATGTACTTA GGCTTCGTGATGTTGCCACAGGGGATAGGCTGGACACTCGAAGGTTACTTCGGCCCTAAATTGTATGAGATGTACGCCTC TAAAGAGATTTTTTCTCTTGAGCTATTAGCCCAGCGAGGCATGAGCTCAACTGAGATCAGTGCCATTCCACAAGGCGAAG CTTTTACCACCCTAGTCGCTTATACCGGTGAACCAGCTCAAGAGCTAACGACCTTACTGTACAATAGCCATAACATCGGC ATGGCTTGGTACATCATTGCGGCTATCGGCACCATATCGGCCGTAGGTATTTATCTATACGGCAAGTGGTTATTTAAGCT ACAACAGCGCTAA
Upstream 100 bases:
>100_bases GCGTTTTAGCAAACAATGACACTGTCAATACACCTAAAACCAACACAAGATTAAAACATACAAAATAACTATAAATAATT AGAACATTTGAAGGAAAGTT
Downstream 100 bases:
>100_bases ATTAATTAGACGCTCACAATTACAGATACAAAAAAGCTGACCTTAGTAGGTCAGCTTTTTTTTCGCTTCATTTACACATT ATCGGAGATAAATAGTGATA
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Superfamily Permease
Number of amino acids: Translated: 510; Mature: 509
Protein sequence:
>510_residues MSDSNDAYADNDLREVKQLGMWASIASLSYIFWIVGGMELVERIAYYGVKASAGLYAKAPTSEGGLGISLSDYGIIIALW AFMQTFIPVFTGGISDRVGYKETIFVSTIIKIAGYLVMAFFPSFYGFLFGAILLAGGTGVFKPGIQGTLVLSTGRQNTSM AWGIFYQVVNIGGFLGPLVAVHMRQLSWDNVFYACAAIISLNFLFLLAYKEPGKEERMERNRKIKAGEIHQEALWRDALN ELKKPVVIYYMLVFAGFWFLFNSLFDVLPIHIAEWVDTSVIVTSLFGPEGTSNGMFQFWLGLDNTGTKVMPEGMLNLNAG MIMTSCFLVAALTAKYRITTAMLGGCLLSIFAFVLIGATNTAWMMVLAIAMFSFGEMMISPKKNEFMGNIAPEGKKAMYL GFVMLPQGIGWTLEGYFGPKLYEMYASKEIFSLELLAQRGMSSTEISAIPQGEAFTTLVAYTGEPAQELTTLLYNSHNIG MAWYIIAAIGTISAVGIYLYGKWLFKLQQR
Sequences:
>Translated_510_residues MSDSNDAYADNDLREVKQLGMWASIASLSYIFWIVGGMELVERIAYYGVKASAGLYAKAPTSEGGLGISLSDYGIIIALW AFMQTFIPVFTGGISDRVGYKETIFVSTIIKIAGYLVMAFFPSFYGFLFGAILLAGGTGVFKPGIQGTLVLSTGRQNTSM AWGIFYQVVNIGGFLGPLVAVHMRQLSWDNVFYACAAIISLNFLFLLAYKEPGKEERMERNRKIKAGEIHQEALWRDALN ELKKPVVIYYMLVFAGFWFLFNSLFDVLPIHIAEWVDTSVIVTSLFGPEGTSNGMFQFWLGLDNTGTKVMPEGMLNLNAG MIMTSCFLVAALTAKYRITTAMLGGCLLSIFAFVLIGATNTAWMMVLAIAMFSFGEMMISPKKNEFMGNIAPEGKKAMYL GFVMLPQGIGWTLEGYFGPKLYEMYASKEIFSLELLAQRGMSSTEISAIPQGEAFTTLVAYTGEPAQELTTLLYNSHNIG MAWYIIAAIGTISAVGIYLYGKWLFKLQQR >Mature_509_residues SDSNDAYADNDLREVKQLGMWASIASLSYIFWIVGGMELVERIAYYGVKASAGLYAKAPTSEGGLGISLSDYGIIIALWA FMQTFIPVFTGGISDRVGYKETIFVSTIIKIAGYLVMAFFPSFYGFLFGAILLAGGTGVFKPGIQGTLVLSTGRQNTSMA WGIFYQVVNIGGFLGPLVAVHMRQLSWDNVFYACAAIISLNFLFLLAYKEPGKEERMERNRKIKAGEIHQEALWRDALNE LKKPVVIYYMLVFAGFWFLFNSLFDVLPIHIAEWVDTSVIVTSLFGPEGTSNGMFQFWLGLDNTGTKVMPEGMLNLNAGM IMTSCFLVAALTAKYRITTAMLGGCLLSIFAFVLIGATNTAWMMVLAIAMFSFGEMMISPKKNEFMGNIAPEGKKAMYLG FVMLPQGIGWTLEGYFGPKLYEMYASKEIFSLELLAQRGMSSTEISAIPQGEAFTTLVAYTGEPAQELTTLLYNSHNIGM AWYIIAAIGTISAVGIYLYGKWLFKLQQR
Specific function: Unknown
COG id: COG3104
COG function: function code E; Dipeptide/tripeptide permease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56312; Mature: 56181
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDSNDAYADNDLREVKQLGMWASIASLSYIFWIVGGMELVERIAYYGVKASAGLYAKAP CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECC TSEGGLGISLSDYGIIIALWAFMQTFIPVFTGGISDRVGYKETIFVSTIIKIAGYLVMAF CCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH FPSFYGFLFGAILLAGGTGVFKPGIQGTLVLSTGRQNTSMAWGIFYQVVNIGGFLGPLVA HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH VHMRQLSWDNVFYACAAIISLNFLFLLAYKEPGKEERMERNRKIKAGEIHQEALWRDALN HHHHHCCCCHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH ELKKPVVIYYMLVFAGFWFLFNSLFDVLPIHIAEWVDTSVIVTSLFGPEGTSNGMFQFWL HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE GLDNTGTKVMPEGMLNLNAGMIMTSCFLVAALTAKYRITTAMLGGCLLSIFAFVLIGATN ECCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC TAWMMVLAIAMFSFGEMMISPKKNEFMGNIAPEGKKAMYLGFVMLPQGIGWTLEGYFGPK HHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEEEEEECCCCCCEEECCCCHH LYEMYASKEIFSLELLAQRGMSSTEISAIPQGEAFTTLVAYTGEPAQELTTLLYNSHNIG HHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCC MAWYIIAAIGTISAVGIYLYGKWLFKLQQR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SDSNDAYADNDLREVKQLGMWASIASLSYIFWIVGGMELVERIAYYGVKASAGLYAKAP CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECC TSEGGLGISLSDYGIIIALWAFMQTFIPVFTGGISDRVGYKETIFVSTIIKIAGYLVMAF CCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH FPSFYGFLFGAILLAGGTGVFKPGIQGTLVLSTGRQNTSMAWGIFYQVVNIGGFLGPLVA HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH VHMRQLSWDNVFYACAAIISLNFLFLLAYKEPGKEERMERNRKIKAGEIHQEALWRDALN HHHHHCCCCHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH ELKKPVVIYYMLVFAGFWFLFNSLFDVLPIHIAEWVDTSVIVTSLFGPEGTSNGMFQFWL HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE GLDNTGTKVMPEGMLNLNAGMIMTSCFLVAALTAKYRITTAMLGGCLLSIFAFVLIGATN ECCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC TAWMMVLAIAMFSFGEMMISPKKNEFMGNIAPEGKKAMYLGFVMLPQGIGWTLEGYFGPK HHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEEEEEECCCCCCEEECCCCHH LYEMYASKEIFSLELLAQRGMSSTEISAIPQGEAFTTLVAYTGEPAQELTTLLYNSHNIG HHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCC MAWYIIAAIGTISAVGIYLYGKWLFKLQQR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA