| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157960537
Identifier: 157960537
GI number: 157960537
Start: 872041
End: 872829
Strand: Reverse
Name: 157960537
Synonym: Spea_0709
Alternate gene names: NA
Gene position: 872829-872041 (Counterclockwise)
Preceding gene: 157960538
Following gene: 157960536
Centisome position: 16.87
GC content: 46.89
Gene sequence:
>789_bases ATGACCCGAAAACATCCAAGCCTTAGAGTCAAAATATTACGTCAACTTCGCCCATGGCATCGTAGAATAGGCCTATTCTC GACCCTGTTAGTGATCTTTATTGCCGTGACAGGGGTGCTAATAAACCATAGCAATCATCTCTCCCTCGACAGCACTCAAG TCAAGCAAGCTTGGTTACTGGATTACTATGGTATTAAAGCACCAACCGATGTAGCCCTTTATCAAACCAGCCCTCAGACG CTTCTCAGTACAACCAACCAGCTTTGGCTAAATGATAAATTGGCCTTAGAGGCTAGCGAGCCTATTTTGGCCGCCATCGC ACATAAAGAGATGATAGTCGCCATCGATAGTCAGCATCTCTACCTACTCTCTGCTCAGGGGGAGTTATTCGAGACTCAAA GCCTTGCCACAGGCCTACCGAAAGACATAGAAGCCATCGGCCAAACCGACGAACTTTGGCTAAAAACCGCCACAGGCTTG TACCTAGCCGATAGCGACCTTATCGAATGGACAGCGGCTCAACCTTATGCAGCCATAGACTGGGTTAAACCTATAGAAAG CCCTGAAACCGCAGAATTTACTCAGCAAATGAGAGCGAGTCATTTAACTTGGGAGCGGGTACTGCTAGATCTTCATAGCG GCCGTTTCTTTGGCTCCTTAGGCCCTTGGCTCATGGATCTCGTGGCATTAAGTTTATTGATTATGGCGTTTACCGGAGTC TATATCTGGTTACAGCAAAAACCGCCAAGAAAGAAGAAAACAGGTTTAAAAGAAGGTCCTAGGTCCTAG
Upstream 100 bases:
>100_bases GCATTTGTTACTGTAGAGTAAACGGTCTGTGTGGCGGATAGCGACACAAAACCGCATCAATACTGATAAAACAACAATAA AAAGGTCAGCAGGCCCGACA
Downstream 100 bases:
>100_bases GAAAGGCAGGGAAAGCAGAGACGGTAAGAGCCGAACGGCCTGCGGCCTAGGGAACGTGACTGCGTCACTTACCGAGCGCT GCGCATAGGGATAAAGCGGA
Product: PepSY-associated TM helix domain-containing protein
Products: NA
Alternate protein names: PepSY-Associated TM Helix; PepSY-Associated TM Helix Family; Iron-Regulated Membrane Protein; PepSY-Associated TM Helix Family Protein; PepSY-Associated TM Helix Domain Protein
Number of amino acids: Translated: 262; Mature: 261
Protein sequence:
>262_residues MTRKHPSLRVKILRQLRPWHRRIGLFSTLLVIFIAVTGVLINHSNHLSLDSTQVKQAWLLDYYGIKAPTDVALYQTSPQT LLSTTNQLWLNDKLALEASEPILAAIAHKEMIVAIDSQHLYLLSAQGELFETQSLATGLPKDIEAIGQTDELWLKTATGL YLADSDLIEWTAAQPYAAIDWVKPIESPETAEFTQQMRASHLTWERVLLDLHSGRFFGSLGPWLMDLVALSLLIMAFTGV YIWLQQKPPRKKKTGLKEGPRS
Sequences:
>Translated_262_residues MTRKHPSLRVKILRQLRPWHRRIGLFSTLLVIFIAVTGVLINHSNHLSLDSTQVKQAWLLDYYGIKAPTDVALYQTSPQT LLSTTNQLWLNDKLALEASEPILAAIAHKEMIVAIDSQHLYLLSAQGELFETQSLATGLPKDIEAIGQTDELWLKTATGL YLADSDLIEWTAAQPYAAIDWVKPIESPETAEFTQQMRASHLTWERVLLDLHSGRFFGSLGPWLMDLVALSLLIMAFTGV YIWLQQKPPRKKKTGLKEGPRS >Mature_261_residues TRKHPSLRVKILRQLRPWHRRIGLFSTLLVIFIAVTGVLINHSNHLSLDSTQVKQAWLLDYYGIKAPTDVALYQTSPQTL LSTTNQLWLNDKLALEASEPILAAIAHKEMIVAIDSQHLYLLSAQGELFETQSLATGLPKDIEAIGQTDELWLKTATGLY LADSDLIEWTAAQPYAAIDWVKPIESPETAEFTQQMRASHLTWERVLLDLHSGRFFGSLGPWLMDLVALSLLIMAFTGVY IWLQQKPPRKKKTGLKEGPRS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29566; Mature: 29434
Theoretical pI: Translated: 7.97; Mature: 7.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRKHPSLRVKILRQLRPWHRRIGLFSTLLVIFIAVTGVLINHSNHLSLDSTQVKQAWLL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH DYYGIKAPTDVALYQTSPQTLLSTTNQLWLNDKLALEASEPILAAIAHKEMIVAIDSQHL HHCCCCCCCCEEEEECCCHHHHHCCHHEEECCCEEEECCCCHHHHHHCCEEEEEECCCEE YLLSAQGELFETQSLATGLPKDIEAIGQTDELWLKTATGLYLADSDLIEWTAAQPYAAID EEEECCCCHHHHHHHHCCCCHHHHHHCCCHHHHHHHCCCEEEECCCHHEECCCCCCHHHH WVKPIESPETAEFTQQMRASHLTWERVLLDLHSGRFFGSLGPWLMDLVALSLLIMAFTGV HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH YIWLQQKPPRKKKTGLKEGPRS EEEEECCCCCHHHCCCCCCCCC >Mature Secondary Structure TRKHPSLRVKILRQLRPWHRRIGLFSTLLVIFIAVTGVLINHSNHLSLDSTQVKQAWLL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH DYYGIKAPTDVALYQTSPQTLLSTTNQLWLNDKLALEASEPILAAIAHKEMIVAIDSQHL HHCCCCCCCCEEEEECCCHHHHHCCHHEEECCCEEEECCCCHHHHHHCCEEEEEECCCEE YLLSAQGELFETQSLATGLPKDIEAIGQTDELWLKTATGLYLADSDLIEWTAAQPYAAID EEEECCCCHHHHHHHHCCCCHHHHHHCCCHHHHHHHCCCEEEECCCHHEECCCCCCHHHH WVKPIESPETAEFTQQMRASHLTWERVLLDLHSGRFFGSLGPWLMDLVALSLLIMAFTGV HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH YIWLQQKPPRKKKTGLKEGPRS EEEEECCCCCHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA