| Definition | Rickettsia akari str. Hartford, complete genome. |
|---|---|
| Accession | NC_009881 |
| Length | 1,231,060 |
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The map label for this gene is yjcF [C]
Identifier: 157825867
GI number: 157825867
Start: 724269
End: 727133
Strand: Direct
Name: yjcF [C]
Synonym: A1C_04030
Alternate gene names: 157825867
Gene position: 724269-727133 (Clockwise)
Preceding gene: 157825866
Following gene: 157825868
Centisome position: 58.83
GC content: 30.37
Gene sequence:
>2865_bases ATGACAAATCTTAATATATATAAATGTGAAGAAAAAGACTTAAACGATTATCTTGATTATATAAAAGATAACCCTAGTGT CTCATTAAATGATTTTATCAAAAATAAATATTTCGCTGAAGATAATAATACAATTATCATGACTAGCTTAGAAAATATGG AAATTAACACAGATTTAGTCAATGCTAATTTCCAAGGTACAATATTAACAGATGCAGTATTTAATAATTGTGATTTAACA AATACCATATTATGTGATGCAGATTTAACAAATGTAAAATTTAATGATTGTACATTTATCAGTACCGACTTTAGAGGCGC AAATCTTCATTACACAGACTTTAATTATAAAGATTATGATTATGATCACTATAAAATCCCCAATCTAAAAGATAAAATAC GAGATATAAAACTCTCTTTTTCAAATCTTGAAAGATTAAATAAATACATAGATAAGGATTTAGAAAAAGAACGTATTAAA GAAATAGTTATAGATGAAATTACGAATAAAAAGAAATATATTCTAGCTACGGAAGACGAAGAAACTTTACATACAGTAAA ATCAAAAGAGCTACAGACTAAGCAAGAAGAGTTAGAAACTCTAAAGCAAAACCTAGATAATCCTGGGATTGTTACCAATC TTTTAAATGCTTTTTGGAATAGTACAGAAACTATTGCTCAAAACCGACAAAACAAACTAGAAAAAATCAATAAGTTACAG CATGGAATAAATAAATTAGAGACTGAAATATATGCTTTAGATAATCTTAGAATGTTCTGCGGTAACGGTCTTGCAGATAT TTTTAAGCAGTTAAAAGATGAAAAAATACAAGTAAAACTAGATCCGTCATATATTATAGGTGCGCCAGCCAAAGAACGTG ATATACCGAAAGAATATATAAAATTAACTTCTGCCGAATTTGATCTATATTTAGCTGAAGCAACAAAACAATCTGATACA AAATTATCTCTTACCGATTTTGTTAGAAAGCAAAAAAAACTTTCAGAAGATTTAAATATAGTTCCTGATCTTTCAGACAT TAATTTATCAGGTAAAACTCTTACTAATCTTAACATGAAGAATACATTATTTGCTTCAGCTAATTTAGAAAATATTAACA TCTCAAATTGTAATTTAGATTTTACTAATTTTGAAGGAGCTAATTTACACAATGCTGTTTTTCAAGATGTTACGGCTCGT AACGCAGTATTTCTTTTTGCTGATCTTAAAAATAGCAAAATTGAAAATAGCGATATGTCGAGAGCTTACATGCCTAAAGT AGATTTATCTGAAGCAGAGGTAACAAATAGCAAATTTAATGCTATTATGATGGTTAATGCCGATGCCGAAAAGTTAATTA TGCAAGATTCAGAATGGCAAAATTCTAATCTTACCGGTATATCACTTGCTTATGCAGATATGCAAAGAGTTCAAATGCAA GGAGTAATTTTAAATAATGCACTTCTAGATCAAGCAAATATCGTTTCTACTGATCTTGAAAATGCTTTTATGAATAATGC ACGTGCGTTAGAAGCAAAATTCAAAGAGCAATGTAACATGCAAGGCATAACTGCAAGGAATGCCTATTTTAGCGATGCTG AATTTGAAAATATACTATCTTTAAAAGAAGCTGACTTAAGAGAAGCTATAATACAGCGTGTTAAACTTAAGAATGCTGAT TTAACAAAAGCAAATCTGGATAAAGCAAATCTTGAATATGCCGATCTTACAAACGCTACGCTTACTAATGCAACTGCACA ATTTGTTAAGTTAAGTAATGCTACTTTAGAAAAAGCAGAAGCTGAAGGATTAAATATTTCTGATGTTATTGCTACAAATA TTAATGCTAAGGAAGCTAACTTTAAAAATGTAATTATGCAGCGTGCTGATCTTACTAAAGCCGATTTCACTAAAGCGATG CTTGAAAATGCAGATATGCAAGCAGTAGAAGCACTTGATGCTATATTTAAAGAAGCAAATCTAAAACAAGCAAATCTAAA AGCAGCAAATCTAGCTGGAATTAATAAAGAAGGAGCAGATTTTGATAAAGCAAAACTCAACGATGCTACAAAGATGCATG ATACTAAAGGTGAGTCTAAAGGGAATTTAAATCATCAAGATAAAGACGGTAAAAAAACATCTGTCAATGTTAACGAGCAT GCTAAATTACAAGATAAAATTCATGCAAGAGAAAAAAGCGGTTGGTTTCTGAAAACCGTGGTAGGACAGCTTGGTACAAA AATTGCTAGAACTACTACATCAGGAATTAGCAGCGTAACAAAATTTTTAGCAAGTAAGAATTTTTTAGTAGGGCTTGCCG TAGTAGCAGGTCTTGTAGTAGCAGCTGCACCTTTCGTAGCGATGCCTGCATTATTGGTCACCGGCACAGCCCTTGCTACT AAAGCTGTTATTCTAGGAGCAGGTATTTTAGCTGGAGGTCTAGTCGCTATTTGCACTGATAAACTTATTCAAAAACCTTT ACGCAATCTTCAGAAATCATGTGAAAACTTAACTAGTAGTATAGATAAATATATCTCACCGCCTCCTGAAAATATTGATG AATTAGTAAAAGAACAACAACAAGCGAAACAAAAAGCTGAGACAGAAAAATCTAAAGAAAGGGAAAAAAATTTAAATAAT GTAAATAATAATATTGATAAAGCTAAAGAACAAGATATTTTAAAACAAGTACAAAATAATTTAAACCAAGAAACGCCAAA AAAAGATAAAACTATAGAAAAACAACAAACAGAGCCTGGTAAATTTGCAGCAAAATTTCAGCCTAACACTAAAGGGAATG GATTTGTTAAAAAAATACAAGACGAAAAAAAACACACAAATTCAACAAAAGAAGTATATAACTAA
Upstream 100 bases:
>100_bases TAAAACCCGGAGCTTATAAAGAAATAAATAATAAAATACTGGCAGAATAATTAGTAATGTGTTACCATTAACGTATTTTA ACTAATCATATAGAAAACAT
Downstream 100 bases:
>100_bases ATAAGTGTTAAAAATAATATCCGGTAAATATAGAAACCAAATTATACCTACCGCTAAAAATATCAAATATCGGCCTTCCA CCGGTAAGCTCAAAGAGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 954; Mature: 953
Protein sequence:
>954_residues MTNLNIYKCEEKDLNDYLDYIKDNPSVSLNDFIKNKYFAEDNNTIIMTSLENMEINTDLVNANFQGTILTDAVFNNCDLT NTILCDADLTNVKFNDCTFISTDFRGANLHYTDFNYKDYDYDHYKIPNLKDKIRDIKLSFSNLERLNKYIDKDLEKERIK EIVIDEITNKKKYILATEDEETLHTVKSKELQTKQEELETLKQNLDNPGIVTNLLNAFWNSTETIAQNRQNKLEKINKLQ HGINKLETEIYALDNLRMFCGNGLADIFKQLKDEKIQVKLDPSYIIGAPAKERDIPKEYIKLTSAEFDLYLAEATKQSDT KLSLTDFVRKQKKLSEDLNIVPDLSDINLSGKTLTNLNMKNTLFASANLENINISNCNLDFTNFEGANLHNAVFQDVTAR NAVFLFADLKNSKIENSDMSRAYMPKVDLSEAEVTNSKFNAIMMVNADAEKLIMQDSEWQNSNLTGISLAYADMQRVQMQ GVILNNALLDQANIVSTDLENAFMNNARALEAKFKEQCNMQGITARNAYFSDAEFENILSLKEADLREAIIQRVKLKNAD LTKANLDKANLEYADLTNATLTNATAQFVKLSNATLEKAEAEGLNISDVIATNINAKEANFKNVIMQRADLTKADFTKAM LENADMQAVEALDAIFKEANLKQANLKAANLAGINKEGADFDKAKLNDATKMHDTKGESKGNLNHQDKDGKKTSVNVNEH AKLQDKIHAREKSGWFLKTVVGQLGTKIARTTTSGISSVTKFLASKNFLVGLAVVAGLVVAAAPFVAMPALLVTGTALAT KAVILGAGILAGGLVAICTDKLIQKPLRNLQKSCENLTSSIDKYISPPPENIDELVKEQQQAKQKAETEKSKEREKNLNN VNNNIDKAKEQDILKQVQNNLNQETPKKDKTIEKQQTEPGKFAAKFQPNTKGNGFVKKIQDEKKHTNSTKEVYN
Sequences:
>Translated_954_residues MTNLNIYKCEEKDLNDYLDYIKDNPSVSLNDFIKNKYFAEDNNTIIMTSLENMEINTDLVNANFQGTILTDAVFNNCDLT NTILCDADLTNVKFNDCTFISTDFRGANLHYTDFNYKDYDYDHYKIPNLKDKIRDIKLSFSNLERLNKYIDKDLEKERIK EIVIDEITNKKKYILATEDEETLHTVKSKELQTKQEELETLKQNLDNPGIVTNLLNAFWNSTETIAQNRQNKLEKINKLQ HGINKLETEIYALDNLRMFCGNGLADIFKQLKDEKIQVKLDPSYIIGAPAKERDIPKEYIKLTSAEFDLYLAEATKQSDT KLSLTDFVRKQKKLSEDLNIVPDLSDINLSGKTLTNLNMKNTLFASANLENINISNCNLDFTNFEGANLHNAVFQDVTAR NAVFLFADLKNSKIENSDMSRAYMPKVDLSEAEVTNSKFNAIMMVNADAEKLIMQDSEWQNSNLTGISLAYADMQRVQMQ GVILNNALLDQANIVSTDLENAFMNNARALEAKFKEQCNMQGITARNAYFSDAEFENILSLKEADLREAIIQRVKLKNAD LTKANLDKANLEYADLTNATLTNATAQFVKLSNATLEKAEAEGLNISDVIATNINAKEANFKNVIMQRADLTKADFTKAM LENADMQAVEALDAIFKEANLKQANLKAANLAGINKEGADFDKAKLNDATKMHDTKGESKGNLNHQDKDGKKTSVNVNEH AKLQDKIHAREKSGWFLKTVVGQLGTKIARTTTSGISSVTKFLASKNFLVGLAVVAGLVVAAAPFVAMPALLVTGTALAT KAVILGAGILAGGLVAICTDKLIQKPLRNLQKSCENLTSSIDKYISPPPENIDELVKEQQQAKQKAETEKSKEREKNLNN VNNNIDKAKEQDILKQVQNNLNQETPKKDKTIEKQQTEPGKFAAKFQPNTKGNGFVKKIQDEKKHTNSTKEVYN >Mature_953_residues TNLNIYKCEEKDLNDYLDYIKDNPSVSLNDFIKNKYFAEDNNTIIMTSLENMEINTDLVNANFQGTILTDAVFNNCDLTN TILCDADLTNVKFNDCTFISTDFRGANLHYTDFNYKDYDYDHYKIPNLKDKIRDIKLSFSNLERLNKYIDKDLEKERIKE IVIDEITNKKKYILATEDEETLHTVKSKELQTKQEELETLKQNLDNPGIVTNLLNAFWNSTETIAQNRQNKLEKINKLQH GINKLETEIYALDNLRMFCGNGLADIFKQLKDEKIQVKLDPSYIIGAPAKERDIPKEYIKLTSAEFDLYLAEATKQSDTK LSLTDFVRKQKKLSEDLNIVPDLSDINLSGKTLTNLNMKNTLFASANLENINISNCNLDFTNFEGANLHNAVFQDVTARN AVFLFADLKNSKIENSDMSRAYMPKVDLSEAEVTNSKFNAIMMVNADAEKLIMQDSEWQNSNLTGISLAYADMQRVQMQG VILNNALLDQANIVSTDLENAFMNNARALEAKFKEQCNMQGITARNAYFSDAEFENILSLKEADLREAIIQRVKLKNADL TKANLDKANLEYADLTNATLTNATAQFVKLSNATLEKAEAEGLNISDVIATNINAKEANFKNVIMQRADLTKADFTKAML ENADMQAVEALDAIFKEANLKQANLKAANLAGINKEGADFDKAKLNDATKMHDTKGESKGNLNHQDKDGKKTSVNVNEHA KLQDKIHAREKSGWFLKTVVGQLGTKIARTTTSGISSVTKFLASKNFLVGLAVVAGLVVAAAPFVAMPALLVTGTALATK AVILGAGILAGGLVAICTDKLIQKPLRNLQKSCENLTSSIDKYISPPPENIDELVKEQQQAKQKAETEKSKEREKNLNNV NNNIDKAKEQDILKQVQNNLNQETPKKDKTIEKQQTEPGKFAAKFQPNTKGNGFVKKIQDEKKHTNSTKEVYN
Specific function: Unknown
COG id: COG1357
COG function: function code S; Uncharacterized low-complexity proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 7 pentapeptide repeat domains [H]
Homologues:
Organism=Escherichia coli, GI1790502, Length=221, Percent_Identity=24.8868778280543, Blast_Score=67, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001646 [H]
Pfam domain/function: PF00805 Pentapeptide [H]
EC number: NA
Molecular weight: Translated: 106964; Mature: 106833
Theoretical pI: Translated: 5.53; Mature: 5.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNLNIYKCEEKDLNDYLDYIKDNPSVSLNDFIKNKYFAEDNNTIIMTSLENMEINTDLV CCCCCEEECCCCCHHHHHHHHCCCCCCCHHHHHHCCEEECCCCEEEEEECCCCEECCEEE NANFQGTILTDAVFNNCDLTNTILCDADLTNVKFNDCTFISTDFRGANLHYTDFNYKDYD CCCCCCEEEHHHHHCCCCCCCEEEECCCCCCEEECCEEEEEECCCCCEEEEECCCCCCCC YDHYKIPNLKDKIRDIKLSFSNLERLNKYIDKDLEKERIKEIVIDEITNKKKYILATEDE CCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCH ETLHTVKSKELQTKQEELETLKQNLDNPGIVTNLLNAFWNSTETIAQNRQNKLEKINKLQ HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH HGINKLETEIYALDNLRMFCGNGLADIFKQLKDEKIQVKLDPSYIIGAPAKERDIPKEYI HHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHCCCEEEEEECCCEEECCCCCCCCCCHHHH KLTSAEFDLYLAEATKQSDTKLSLTDFVRKQKKLSEDLNIVPDLSDINLSGKTLTNLNMK HHHCCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCC NTLFASANLENINISNCNLDFTNFEGANLHNAVFQDVTARNAVFLFADLKNSKIENSDMS CEEEEECCCCEEECCCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC RAYMPKVDLSEAEVTNSKFNAIMMVNADAEKLIMQDSEWQNSNLTGISLAYADMQRVQMQ HHHCCCCCCCHHHHCCCCCCEEEEEECCHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHH GVILNNALLDQANIVSTDLENAFMNNARALEAKFKEQCNMQGITARNAYFSDAEFENILS HEEEHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHH LKEADLREAIIQRVKLKNADLTKANLDKANLEYADLTNATLTNATAQFVKLSNATLEKAE HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCHHHHHH AEGLNISDVIATNINAKEANFKNVIMQRADLTKADFTKAMLENADMQAVEALDAIFKEAN CCCCCHHHHHEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCC LKQANLKAANLAGINKEGADFDKAKLNDATKMHDTKGESKGNLNHQDKDGKKTSVNVNEH CCHHCCCHHHCCCCCCCCCCCCHHHCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCHH AKLQDKIHAREKSGWFLKTVVGQLGTKIARTTTSGISSVTKFLASKNFLVGLAVVAGLVV HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH AAAPFVAMPALLVTGTALATKAVILGAGILAGGLVAICTDKLIQKPLRNLQKSCENLTSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IDKYISPPPENIDELVKEQQQAKQKAETEKSKEREKNLNNVNNNIDKAKEQDILKQVQNN HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LNQETPKKDKTIEKQQTEPGKFAAKFQPNTKGNGFVKKIQDEKKHTNSTKEVYN CCCCCCCHHCCHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHCC >Mature Secondary Structure TNLNIYKCEEKDLNDYLDYIKDNPSVSLNDFIKNKYFAEDNNTIIMTSLENMEINTDLV CCCCEEECCCCCHHHHHHHHCCCCCCCHHHHHHCCEEECCCCEEEEEECCCCEECCEEE NANFQGTILTDAVFNNCDLTNTILCDADLTNVKFNDCTFISTDFRGANLHYTDFNYKDYD CCCCCCEEEHHHHHCCCCCCCEEEECCCCCCEEECCEEEEEECCCCCEEEEECCCCCCCC YDHYKIPNLKDKIRDIKLSFSNLERLNKYIDKDLEKERIKEIVIDEITNKKKYILATEDE CCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCH ETLHTVKSKELQTKQEELETLKQNLDNPGIVTNLLNAFWNSTETIAQNRQNKLEKINKLQ HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH HGINKLETEIYALDNLRMFCGNGLADIFKQLKDEKIQVKLDPSYIIGAPAKERDIPKEYI HHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHCCCEEEEEECCCEEECCCCCCCCCCHHHH KLTSAEFDLYLAEATKQSDTKLSLTDFVRKQKKLSEDLNIVPDLSDINLSGKTLTNLNMK HHHCCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCC NTLFASANLENINISNCNLDFTNFEGANLHNAVFQDVTARNAVFLFADLKNSKIENSDMS CEEEEECCCCEEECCCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC RAYMPKVDLSEAEVTNSKFNAIMMVNADAEKLIMQDSEWQNSNLTGISLAYADMQRVQMQ HHHCCCCCCCHHHHCCCCCCEEEEEECCHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHH GVILNNALLDQANIVSTDLENAFMNNARALEAKFKEQCNMQGITARNAYFSDAEFENILS HEEEHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHH LKEADLREAIIQRVKLKNADLTKANLDKANLEYADLTNATLTNATAQFVKLSNATLEKAE HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCHHHHHH AEGLNISDVIATNINAKEANFKNVIMQRADLTKADFTKAMLENADMQAVEALDAIFKEAN CCCCCHHHHHEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCC LKQANLKAANLAGINKEGADFDKAKLNDATKMHDTKGESKGNLNHQDKDGKKTSVNVNEH CCHHCCCHHHCCCCCCCCCCCCHHHCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCHH AKLQDKIHAREKSGWFLKTVVGQLGTKIARTTTSGISSVTKFLASKNFLVGLAVVAGLVV HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH AAAPFVAMPALLVTGTALATKAVILGAGILAGGLVAICTDKLIQKPLRNLQKSCENLTSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IDKYISPPPENIDELVKEQQQAKQKAETEKSKEREKNLNNVNNNIDKAKEQDILKQVQNN HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LNQETPKKDKTIEKQQTEPGKFAAKFQPNTKGNGFVKKIQDEKKHTNSTKEVYN CCCCCCCHHCCHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]