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The map label for this gene is smpB [H]

Identifier: 157825715

GI number: 157825715

Start: 584005

End: 584463

Strand: Direct

Name: smpB [H]

Synonym: A1C_03205

Alternate gene names: 157825715

Gene position: 584005-584463 (Clockwise)

Preceding gene: 157825714

Following gene: 157825716

Centisome position: 47.44

GC content: 30.94

Gene sequence:

>459_bases
ATGACCGAATATAAGAAAGTTATTGCACAAAATAATAAAGCCATTTTTAATTATTTTATTGAAGAAAGATTAGAAGCAGG
TATTGTATTAAATGGGAGTGAAGTACAGTCTCTGCGTCAAGGCAAAGCTTCTATAGAGGAAAGCCATGCGGCAGATACCG
GACATGAGGTATTTTTGTATAACTGCCATATTGCAGAATATGAAAAAGCGAATAGATTTAATCATTCTACTCGTAGACCT
CGTAAATTATTGTTGCATACTAAAGAGATAAAGAAAATTATCGGTAGAATTAGAATAAAAGGCTATACGCTAGTAGCTCT
TTCTATGTATTTTAATAAACAAAATAAAGTGAAAGTTGAGCTTGGTATTGCTAAAGGTAAGAAATTACATGATAAAAGAG
AATCAATTAAAGAAAAAGACTGGAAAAGAGATCAGAGTAGATTAATAAGGCAGAAATAA

Upstream 100 bases:

>100_bases
TAGGTTTATGTGAAAATGAAATTAGACCTCCATTAACTGAAGCAAGCGATAGTGCTAAAAAACAAATTGAAAACATTATA
ACAGCACTATCTATAAAAAT

Downstream 100 bases:

>100_bases
GCGTCATTGCGAGAAGCATTACATAGTAATTCGACAAAGCAATCTAGTAAAAAATACTAATTTATGGCATTTTTTTATTA
TGTTTGTTGGATTGCCACGT

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 151

Protein sequence:

>152_residues
MTEYKKVIAQNNKAIFNYFIEERLEAGIVLNGSEVQSLRQGKASIEESHAADTGHEVFLYNCHIAEYEKANRFNHSTRRP
RKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKQNKVKVELGIAKGKKLHDKRESIKEKDWKRDQSRLIRQK

Sequences:

>Translated_152_residues
MTEYKKVIAQNNKAIFNYFIEERLEAGIVLNGSEVQSLRQGKASIEESHAADTGHEVFLYNCHIAEYEKANRFNHSTRRP
RKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKQNKVKVELGIAKGKKLHDKRESIKEKDWKRDQSRLIRQK
>Mature_151_residues
TEYKKVIAQNNKAIFNYFIEERLEAGIVLNGSEVQSLRQGKASIEESHAADTGHEVFLYNCHIAEYEKANRFNHSTRRPR
KLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKQNKVKVELGIAKGKKLHDKRESIKEKDWKRDQSRLIRQK

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes [H]

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family [H]

Homologues:

Organism=Escherichia coli, GI1788973, Length=145, Percent_Identity=44.8275862068966, Blast_Score=120, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000037
- ProDom:   PD004488 [H]

Pfam domain/function: PF01668 SmpB [H]

EC number: NA

Molecular weight: Translated: 17840; Mature: 17709

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEYKKVIAQNNKAIFNYFIEERLEAGIVLNGSEVQSLRQGKASIEESHAADTGHEVFLY
CCHHHHHHHCCCHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEE
NCHIAEYEKANRFNHSTRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKQNKVKVE
ECCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEEEEEHHCCCCCEEEE
LGIAKGKKLHDKRESIKEKDWKRDQSRLIRQK
EECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TEYKKVIAQNNKAIFNYFIEERLEAGIVLNGSEVQSLRQGKASIEESHAADTGHEVFLY
CHHHHHHHCCCHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEE
NCHIAEYEKANRFNHSTRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKQNKVKVE
ECCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEEEEEHHCCCCCEEEE
LGIAKGKKLHDKRESIKEKDWKRDQSRLIRQK
EECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA