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The map label for this gene is rlpA [H]

Identifier: 157825664

GI number: 157825664

Start: 530156

End: 530854

Strand: Reverse

Name: rlpA [H]

Synonym: A1C_02930

Alternate gene names: 157825664

Gene position: 530854-530156 (Counterclockwise)

Preceding gene: 157825665

Following gene: 157825650

Centisome position: 43.12

GC content: 28.76

Gene sequence:

>699_bases
ATGATGATGATACGAACCCATAAACTTATTGTATTAATTTTTTTATTGACTTTTAGTCTAAGCGGTTGTAACACATCAAA
AAGATTACCTTATTCCCGCAAATATTCTTACAAAGAATTATCAAAGGATGATCCTCATAATCTAACTTATAAAGGGCATT
ATAAAGTTGGCACAAATTATAAAATAAATGGAAAAACTTACAAACCTCACAGTCCTAAATCTTTTACCGAAATAGGTTAT
GCTTCATGGTACGGTGGACGTAAAGATGGTTTTCACGGTAAAAAAACGGCTAACGGTGATAGATTTAATAGAAATCTATT
AACTGCAGCACATAAAACTCTTCCGCTTCCTTGCTTAGTTAAAGTTACCAACAAAGCCAATAATAAATCAGTAATTTTAA
TGGTTAATGATAGAGGTCCTTTTAAGAAAAATCGTATAATAGATGTTTCTCAAAAAGCGGCTGAAATTTTAGCATTTAAA
AATCAAGGTATAACTAAAGTAAAAGTAGAATATTTACCTAATGAAACTGAGAAATTTCTAAAAAATATTAATCTAAAAAA
ACCACAAAGTAAAACTTTAGCTAAACACTCTAAAAAATCTTCATCTACTAAAGTTACAAAAAACGCTAAATGTAGTGTTA
ATTGTCATATAAAACTTGTAAATCTAAAATATAAGCTGGCCATAAATCCAGATGAGTGA

Upstream 100 bases:

>100_bases
TCAGAAGAAGAGCTAGAAAAGCTTGCTTCTATTGCATCAAAAATAAAAGGGGTTGAAAAAGTTGTGTGTTACGCTAAAAT
AATTGATTATTTTAATAAAC

Downstream 100 bases:

>100_bases
ATATTATCGGCATTGTGAGAGTCTAGTAGTTGTTTCATGACTCGATTTTTTCACGTCATTGAGAGATGTAAAACTTAAGT
TTCGACGAAGTAATCCTAGG

Product: rare lipoprotein A precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MMMIRTHKLIVLIFLLTFSLSGCNTSKRLPYSRKYSYKELSKDDPHNLTYKGHYKVGTNYKINGKTYKPHSPKSFTEIGY
ASWYGGRKDGFHGKKTANGDRFNRNLLTAAHKTLPLPCLVKVTNKANNKSVILMVNDRGPFKKNRIIDVSQKAAEILAFK
NQGITKVKVEYLPNETEKFLKNINLKKPQSKTLAKHSKKSSSTKVTKNAKCSVNCHIKLVNLKYKLAINPDE

Sequences:

>Translated_232_residues
MMMIRTHKLIVLIFLLTFSLSGCNTSKRLPYSRKYSYKELSKDDPHNLTYKGHYKVGTNYKINGKTYKPHSPKSFTEIGY
ASWYGGRKDGFHGKKTANGDRFNRNLLTAAHKTLPLPCLVKVTNKANNKSVILMVNDRGPFKKNRIIDVSQKAAEILAFK
NQGITKVKVEYLPNETEKFLKNINLKKPQSKTLAKHSKKSSSTKVTKNAKCSVNCHIKLVNLKYKLAINPDE
>Mature_232_residues
MMMIRTHKLIVLIFLLTFSLSGCNTSKRLPYSRKYSYKELSKDDPHNLTYKGHYKVGTNYKINGKTYKPHSPKSFTEIGY
ASWYGGRKDGFHGKKTANGDRFNRNLLTAAHKTLPLPCLVKVTNKANNKSVILMVNDRGPFKKNRIIDVSQKAAEILAFK
NQGITKVKVEYLPNETEKFLKNINLKKPQSKTLAKHSKKSSSTKVTKNAKCSVNCHIKLVNLKYKLAINPDE

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=116, Percent_Identity=37.9310344827586, Blast_Score=84, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR005728
- InterPro:   IPR022438
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 26393; Mature: 26393

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMMIRTHKLIVLIFLLTFSLSGCNTSKRLPYSRKYSYKELSKDDPHNLTYKGHYKVGTNY
CEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEEEEEECCCE
KINGKTYKPHSPKSFTEIGYASWYGGRKDGFHGKKTANGDRFNRNLLTAAHKTLPLPCLV
EECCEEECCCCCCCHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEE
KVTNKANNKSVILMVNDRGPFKKNRIIDVSQKAAEILAFKNQGITKVKVEYLPNETEKFL
EEECCCCCCEEEEEECCCCCCCCCCEEECHHHHHHHHHCCCCCCEEEEEEECCCHHHHHH
KNINLKKPQSKTLAKHSKKSSSTKVTKNAKCSVNCHIKLVNLKYKLAINPDE
HCCCCCCCCHHHHHHHHCCCCCCEEECCCEEEEEEEEEEEEEEEEEEECCCC
>Mature Secondary Structure
MMMIRTHKLIVLIFLLTFSLSGCNTSKRLPYSRKYSYKELSKDDPHNLTYKGHYKVGTNY
CEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEEEEEECCCE
KINGKTYKPHSPKSFTEIGYASWYGGRKDGFHGKKTANGDRFNRNLLTAAHKTLPLPCLV
EECCEEECCCCCCCHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEE
KVTNKANNKSVILMVNDRGPFKKNRIIDVSQKAAEILAFKNQGITKVKVEYLPNETEKFL
EEECCCCCCEEEEEECCCCCCCCCCEEECHHHHHHHHHCCCCCCEEEEEEECCCHHHHHH
KNINLKKPQSKTLAKHSKKSSSTKVTKNAKCSVNCHIKLVNLKYKLAINPDE
HCCCCCCCCHHHHHHHHCCCCCCEEECCCEEEEEEEEEEEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]