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The map label for this gene is rimM

Identifier: 157825607

GI number: 157825607

Start: 473536

End: 474033

Strand: Reverse

Name: rimM

Synonym: A1C_02610

Alternate gene names: 157825607

Gene position: 474033-473536 (Counterclockwise)

Preceding gene: 157825610

Following gene: 157825605

Centisome position: 38.51

GC content: 27.91

Gene sequence:

>498_bases
ATGAATTCTTTAGAAAATTTAATTTTAGTCGGTGTAATAAAATCATGTCATGGAATTAAAGGTCATGTAATTTTAAAATC
TTTTACCGAACCTGCTACAAAAATACTTGCAAAAAATTTAGTAAATGAGTCAAGAGAAGATATACATATTCAGCTAATTA
GCCAAAATGCCAAAGGAGAATTAATTTGTAGATTTAATGATATAACTACTAGAAATGAAGCAGAAAACTTAAAAGGCTAT
AAAATATTTTGCTTAAGAGCAAGCTTACCGGAACCGGCAGAAGATGAATTTTATATAGCGGATTTAAATCATTTACCGGT
ATTAGACCCAAATCATAAAGAAATAGGCAAAATTAAAAATATTCTTAACTTTGGTGCCGGCGATATAATTGAAATAGAAT
TTTTAGACCAAACAACTGAGTTATTACCTTTCAATAAAGAGTTTTTTCCTGTTATAACTAAAGATTATGTGACTTTAAAT
TATCAAAGAGGAGTTTGA

Upstream 100 bases:

>100_bases
AAACAAATTGTGATGCCCGCAGCTATTTTTTTTATCATGTCTATAAAAAAGTTTTTGAATATATTATTATATATAATTGT
CAAAATTTAAAGGCAAATTA

Downstream 100 bases:

>100_bases
ATACTTAAATTTTTCAGTCTCTTATTTTTGACGCTGTTTTTGTAATTCTTTAATACTCTTTTTTGTAAAACCGGTAAATT
CAATAATTTCGTCTAAAGGA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MNSLENLILVGVIKSCHGIKGHVILKSFTEPATKILAKNLVNESREDIHIQLISQNAKGELICRFNDITTRNEAENLKGY
KIFCLRASLPEPAEDEFYIADLNHLPVLDPNHKEIGKIKNILNFGAGDIIEIEFLDQTTELLPFNKEFFPVITKDYVTLN
YQRGV

Sequences:

>Translated_165_residues
MNSLENLILVGVIKSCHGIKGHVILKSFTEPATKILAKNLVNESREDIHIQLISQNAKGELICRFNDITTRNEAENLKGY
KIFCLRASLPEPAEDEFYIADLNHLPVLDPNHKEIGKIKNILNFGAGDIIEIEFLDQTTELLPFNKEFFPVITKDYVTLN
YQRGV
>Mature_165_residues
MNSLENLILVGVIKSCHGIKGHVILKSFTEPATKILAKNLVNESREDIHIQLISQNAKGELICRFNDITTRNEAENLKGY
KIFCLRASLPEPAEDEFYIADLNHLPVLDPNHKEIGKIKNILNFGAGDIIEIEFLDQTTELLPFNKEFFPVITKDYVTLN
YQRGV

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_RICAH (A8GN44)

Other databases:

- EMBL:   CP000847
- RefSeq:   YP_001493327.1
- ProteinModelPortal:   A8GN44
- SMR:   A8GN44
- STRING:   A8GN44
- GeneID:   5645646
- GenomeReviews:   CP000847_GR
- KEGG:   rak:A1C_02610
- NMPDR:   fig|293614.3.peg.485
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   KNILNFG
- ProtClustDB:   PRK00122
- BioCyc:   RAKA293614:A1C_02610-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18723; Mature: 18723

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSLENLILVGVIKSCHGIKGHVILKSFTEPATKILAKNLVNESREDIHIQLISQNAKGE
CCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCE
LICRFNDITTRNEAENLKGYKIFCLRASLPEPAEDEFYIADLNHLPVLDPNHKEIGKIKN
EEEEECCCCCCCCHHCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHH
ILNFGAGDIIEIEFLDQTTELLPFNKEFFPVITKDYVTLNYQRGV
HHHCCCCCEEEEEEECCCHHHCCCCCCCCCEEEECEEEEEEECCC
>Mature Secondary Structure
MNSLENLILVGVIKSCHGIKGHVILKSFTEPATKILAKNLVNESREDIHIQLISQNAKGE
CCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCE
LICRFNDITTRNEAENLKGYKIFCLRASLPEPAEDEFYIADLNHLPVLDPNHKEIGKIKN
EEEEECCCCCCCCHHCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHH
ILNFGAGDIIEIEFLDQTTELLPFNKEFFPVITKDYVTLNYQRGV
HHHCCCCCEEEEEEECCCHHHCCCCCCCCCEEEECEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA