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The map label for this gene is yibD [C]

Identifier: 157825589

GI number: 157825589

Start: 458015

End: 459829

Strand: Direct

Name: yibD [C]

Synonym: A1C_02510

Alternate gene names: 157825589

Gene position: 458015-459829 (Clockwise)

Preceding gene: 157825588

Following gene: 157825592

Centisome position: 37.2

GC content: 28.1

Gene sequence:

>1815_bases
ATGATAACTAAAAAAGATAAAACTTTAAATATTTATTGTCCTTTAGTTTCCATTATTATACCTGTCTATAATGGGGCTAA
TTATATGCGTGAAGCGATAGATAGTGCTTTAGCCCAAACATATGAAAATATTGAAATTGTAGTTGTTAATGATGGCTCTA
AAGATAATGGGAAGACAGAAAATGTAGCATTATCATACGGTGATAAAATACGCTATTTTTATAAAGAAAACGGTGGTTGT
GGTTCGGCTTTAAATTATGGTATAAAAAACATGAATGGGGAGTATTTTTCATGGCTTAGCCATGATGATATATATTATCC
TAATAAAATTGAGCATCAAGTTAACATATTAAATAAATTAGATAATAAAGATACTATCATTTATGGCGGTTATGAATTAA
TTGATGAAAAAGGAAGTTCTTTACGTTATATTAAACCGGATAGTGTGCTACCTATAGATAAACTTAATATTTCTTTATTA
CCTTTATTACGAGGATTAATACATGGTTGTTCGTTATTAATGCCTGCTAAATATTTTCATGAAATTGGTATATTTAATGA
AGCTTTACCGACAACGCAAGATTATGATTTATGGTTTAAAATTTTCCGTGTTGCCCCTATTCATTTTGATGAGTCTATCC
TAATTAAATCTCGTTTTCATTCAGAGCAAGGTAGTAAAAAAATATCAAATCATAACGAAGAATGTAATGTATTATGGTCA
TCGTTTCTTCACGAGTTAACAGAAGAAGAAATGATCAAAATGGAAGGTTCTCCTTATTTATTTTTGACTCGTACAGCTAC
TTTTTTATCAAATAATACTCCATATAAAAAAGCTTGTGACTTAGCAAATACTATGGCTAAGCAAGTATTACATGATACTA
AAGTTAGTGTGATTATACCGGTATATAACAGAATAAATTGGGCAATTGAAGCTATAGAAAGTGTACTTATTCAAACACAC
AAAAATTTTGAGATACTTATAATAGATGATGGATCGACTGATGATATATCAGAATTAATTGCAAGATGCAAAAAAGATAA
AAGAATAAGATACTTTCATAAAAAAAATGAAGGACCTGCTGCTGCACGTAATTTAGGTATTAAAAATGCTATAGGAAAAT
ATATTGCTTTCCTTGATTCGGATGATTTATTTTATAAGGATAAAATAGAAATCCAATTACAGTTTATGGAAGAAAATAAC
TGTATATTTTCTCATACTTCATATCAAAAAATAGATGAAAAAGCAAAATATATAGAATCTGTTCATTCTGGGTGTTTTAG
TGGAAATGTTTTTCCTCAAGTTATACAAACTTGTCCAATAGCAATGCCGACAGTTATGGGAACTTGGACATTATTCCAAG
AAAATTTATTTCCTGAAAATATAAGAAGTGGTGAAGATTGTTGTTTATGGATATCTATTGCTAGTAAAAACTCAATAGGC
GGTATAGACAAAGAATTGTCTAAAGTACGAATTAGCGGTGGTACTAATACGTTTATGGACCCAAATAAATATTCAGTAGG
TTTAATAAATATTACTTCTTATGTTCTTAATGATCGGTATTTAAGTAAATTTAGTCCGTTTACTATTAATTTATTATTAG
CAGCTGTTACACAATTAAGATTATTAGAAAATAAAAATAAATACTATAAAAAAAGTAATATTTCTTCTTCTAACAATAAT
TATGTAATGCAAAAAATACGAACCTATTGCTTTGTAACAAAAATTTTGATTTTGTTAACTATTACTTCTATAAGGCAAGA
AGGAATACGTGCAACAATCTCTAGAATACGTAGATGGCTTAGAAAGCATATATAA

Upstream 100 bases:

>100_bases
TTCCTAAACCACTGGATGATATCAAGCTTGTTATTATTCTCTTTCTTTAGTTAGCAATGCCACAATAAAACTAACATTTC
ATAAATTATTTCTAAAAGTT

Downstream 100 bases:

>100_bases
ATAACTACTCCTCAAGTATCTTAACTTTTGAGCAGTCACCGATTTTAGTCATACCTTCGTTAACGACTAAGTAACCTTCT
TTAATATCGTTAGAGGTAAT

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 604; Mature: 604

Protein sequence:

>604_residues
MITKKDKTLNIYCPLVSIIIPVYNGANYMREAIDSALAQTYENIEIVVVNDGSKDNGKTENVALSYGDKIRYFYKENGGC
GSALNYGIKNMNGEYFSWLSHDDIYYPNKIEHQVNILNKLDNKDTIIYGGYELIDEKGSSLRYIKPDSVLPIDKLNISLL
PLLRGLIHGCSLLMPAKYFHEIGIFNEALPTTQDYDLWFKIFRVAPIHFDESILIKSRFHSEQGSKKISNHNEECNVLWS
SFLHELTEEEMIKMEGSPYLFLTRTATFLSNNTPYKKACDLANTMAKQVLHDTKVSVIIPVYNRINWAIEAIESVLIQTH
KNFEILIIDDGSTDDISELIARCKKDKRIRYFHKKNEGPAAARNLGIKNAIGKYIAFLDSDDLFYKDKIEIQLQFMEENN
CIFSHTSYQKIDEKAKYIESVHSGCFSGNVFPQVIQTCPIAMPTVMGTWTLFQENLFPENIRSGEDCCLWISIASKNSIG
GIDKELSKVRISGGTNTFMDPNKYSVGLINITSYVLNDRYLSKFSPFTINLLLAAVTQLRLLENKNKYYKKSNISSSNNN
YVMQKIRTYCFVTKILILLTITSIRQEGIRATISRIRRWLRKHI

Sequences:

>Translated_604_residues
MITKKDKTLNIYCPLVSIIIPVYNGANYMREAIDSALAQTYENIEIVVVNDGSKDNGKTENVALSYGDKIRYFYKENGGC
GSALNYGIKNMNGEYFSWLSHDDIYYPNKIEHQVNILNKLDNKDTIIYGGYELIDEKGSSLRYIKPDSVLPIDKLNISLL
PLLRGLIHGCSLLMPAKYFHEIGIFNEALPTTQDYDLWFKIFRVAPIHFDESILIKSRFHSEQGSKKISNHNEECNVLWS
SFLHELTEEEMIKMEGSPYLFLTRTATFLSNNTPYKKACDLANTMAKQVLHDTKVSVIIPVYNRINWAIEAIESVLIQTH
KNFEILIIDDGSTDDISELIARCKKDKRIRYFHKKNEGPAAARNLGIKNAIGKYIAFLDSDDLFYKDKIEIQLQFMEENN
CIFSHTSYQKIDEKAKYIESVHSGCFSGNVFPQVIQTCPIAMPTVMGTWTLFQENLFPENIRSGEDCCLWISIASKNSIG
GIDKELSKVRISGGTNTFMDPNKYSVGLINITSYVLNDRYLSKFSPFTINLLLAAVTQLRLLENKNKYYKKSNISSSNNN
YVMQKIRTYCFVTKILILLTITSIRQEGIRATISRIRRWLRKHI
>Mature_604_residues
MITKKDKTLNIYCPLVSIIIPVYNGANYMREAIDSALAQTYENIEIVVVNDGSKDNGKTENVALSYGDKIRYFYKENGGC
GSALNYGIKNMNGEYFSWLSHDDIYYPNKIEHQVNILNKLDNKDTIIYGGYELIDEKGSSLRYIKPDSVLPIDKLNISLL
PLLRGLIHGCSLLMPAKYFHEIGIFNEALPTTQDYDLWFKIFRVAPIHFDESILIKSRFHSEQGSKKISNHNEECNVLWS
SFLHELTEEEMIKMEGSPYLFLTRTATFLSNNTPYKKACDLANTMAKQVLHDTKVSVIIPVYNRINWAIEAIESVLIQTH
KNFEILIIDDGSTDDISELIARCKKDKRIRYFHKKNEGPAAARNLGIKNAIGKYIAFLDSDDLFYKDKIEIQLQFMEENN
CIFSHTSYQKIDEKAKYIESVHSGCFSGNVFPQVIQTCPIAMPTVMGTWTLFQENLFPENIRSGEDCCLWISIASKNSIG
GIDKELSKVRISGGTNTFMDPNKYSVGLINITSYVLNDRYLSKFSPFTINLLLAAVTQLRLLENKNKYYKKSNISSSNNN
YVMQKIRTYCFVTKILILLTITSIRQEGIRATISRIRRWLRKHI

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=108, Percent_Identity=39.8148148148148, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1788372, Length=115, Percent_Identity=33.9130434782609, Blast_Score=66, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI212640903, Length=260, Percent_Identity=26.1538461538462, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 69208; Mature: 69208

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITKKDKTLNIYCPLVSIIIPVYNGANYMREAIDSALAQTYENIEIVVVNDGSKDNGKTE
CCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCC
NVALSYGDKIRYFYKENGGCGSALNYGIKNMNGEYFSWLSHDDIYYPNKIEHQVNILNKL
EEEEECCCEEEEEEECCCCCCHHHHCCCCCCCCHHEEEECCCCCCCCCCHHHHHHHHHHC
DNKDTIIYGGYELIDEKGSSLRYIKPDSVLPIDKLNISLLPLLRGLIHGCSLLMPAKYFH
CCCCEEEECCHHEECCCCCEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCHHHHH
EIGIFNEALPTTQDYDLWFKIFRVAPIHFDESILIKSRFHSEQGSKKISNHNEECNVLWS
HHCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEHHHHCCCCCCHHHHCCCCHHHHHHH
SFLHELTEEEMIKMEGSPYLFLTRTATFLSNNTPYKKACDLANTMAKQVLHDTKVSVIIP
HHHHHHHHHHHHEECCCCEEEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
VYNRINWAIEAIESVLIQTHKNFEILIIDDGSTDDISELIARCKKDKRIRYFHKKNEGPA
CHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCH
AARNLGIKNAIGKYIAFLDSDDLFYKDKIEIQLQFMEENNCIFSHTSYQKIDEKAKYIES
HHHHCCHHHHHHHHHEEECCCCCEEECEEEEEEEEEECCCEEEECCHHHHHHHHHHHHHH
VHSGCFSGNVFPQVIQTCPIAMPTVMGTWTLFQENLFPENIRSGEDCCLWISIASKNSIG
HHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHCCCCCCEEEEEEEECCCCCC
GIDKELSKVRISGGTNTFMDPNKYSVGLINITSYVLNDRYLSKFSPFTINLLLAAVTQLR
CCHHHHHEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LLENKNKYYKKSNISSSNNNYVMQKIRTYCFVTKILILLTITSIRQEGIRATISRIRRWL
HHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKHI
HHCC
>Mature Secondary Structure
MITKKDKTLNIYCPLVSIIIPVYNGANYMREAIDSALAQTYENIEIVVVNDGSKDNGKTE
CCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCC
NVALSYGDKIRYFYKENGGCGSALNYGIKNMNGEYFSWLSHDDIYYPNKIEHQVNILNKL
EEEEECCCEEEEEEECCCCCCHHHHCCCCCCCCHHEEEECCCCCCCCCCHHHHHHHHHHC
DNKDTIIYGGYELIDEKGSSLRYIKPDSVLPIDKLNISLLPLLRGLIHGCSLLMPAKYFH
CCCCEEEECCHHEECCCCCEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCHHHHH
EIGIFNEALPTTQDYDLWFKIFRVAPIHFDESILIKSRFHSEQGSKKISNHNEECNVLWS
HHCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEHHHHCCCCCCHHHHCCCCHHHHHHH
SFLHELTEEEMIKMEGSPYLFLTRTATFLSNNTPYKKACDLANTMAKQVLHDTKVSVIIP
HHHHHHHHHHHHEECCCCEEEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
VYNRINWAIEAIESVLIQTHKNFEILIIDDGSTDDISELIARCKKDKRIRYFHKKNEGPA
CHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCH
AARNLGIKNAIGKYIAFLDSDDLFYKDKIEIQLQFMEENNCIFSHTSYQKIDEKAKYIES
HHHHCCHHHHHHHHHEEECCCCCEEECEEEEEEEEEECCCEEEECCHHHHHHHHHHHHHH
VHSGCFSGNVFPQVIQTCPIAMPTVMGTWTLFQENLFPENIRSGEDCCLWISIASKNSIG
HHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHCCCCCCEEEEEEEECCCCCC
GIDKELSKVRISGGTNTFMDPNKYSVGLINITSYVLNDRYLSKFSPFTINLLLAAVTQLR
CCHHHHHEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LLENKNKYYKKSNISSSNNNYVMQKIRTYCFVTKILILLTITSIRQEGIRATISRIRRWL
HHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKHI
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]