Click here to switch to the map view.

The map label for this gene is yqgF [C]

Identifier: 157825581

GI number: 157825581

Start: 451193

End: 451657

Strand: Direct

Name: yqgF [C]

Synonym: A1C_02470

Alternate gene names: 157825581

Gene position: 451193-451657 (Clockwise)

Preceding gene: 157825573

Following gene: 157825582

Centisome position: 36.65

GC content: 31.61

Gene sequence:

>465_bases
ATGATAATAAAAAACCTTCAAGCATTTTCTCGGCTTTTAATTCTGAACTCTCCGCTCATAGCTATTGATTACGGAAGCAA
AAAATTAGGAATCGCATTATCTAATCAAGAACGTAGTATTGCTATGCCGTTAAATACTATAACTGAGATAAATAAAAAAA
TTGTTATTACTTCTTTGCTTAGTATAGTTGAAAAATATAAAGTTTGCGGTGTTGTAATAGGTATGCCGATTGATATGAGT
GGAGCAGTAACGGAGCAAACAAATATGGTGATGAAATTTGCCGAAGAATTCACAAAATCTATAAACTTGCCTATATATTT
ACAGGATGAAAGACTAACTACAAAAGCTGCAAATAATTTCCTTAAATCATTTGGGATGAAAAGAAAAGACCGTGATAATA
ACGATGATGCAGTAGCTGCTAGTATGATTCTTGAAACTGTGCTTGACTCTATGAAAAATATTTAA

Upstream 100 bases:

>100_bases
TATGTTTTTGAATAGTTTTGAGCATAAATTAAGTAATATGAAATAAATAGTAGTGATACGAAGTTCAACGAGTATAATAT
AAGTAGACTTAATAACTACC

Downstream 100 bases:

>100_bases
TTAGGCAAGAATTGATGAGTTGTTGCGTGTATCGAAAAACCTACTCAATGCCATCCCCGCAAAAGTGGTGATCCAGAACA
ATAACTTCAATATCGATATA

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MIIKNLQAFSRLLILNSPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLLSIVEKYKVCGVVIGMPIDMS
GAVTEQTNMVMKFAEEFTKSINLPIYLQDERLTTKAANNFLKSFGMKRKDRDNNDDAVAASMILETVLDSMKNI

Sequences:

>Translated_154_residues
MIIKNLQAFSRLLILNSPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLLSIVEKYKVCGVVIGMPIDMS
GAVTEQTNMVMKFAEEFTKSINLPIYLQDERLTTKAANNFLKSFGMKRKDRDNNDDAVAASMILETVLDSMKNI
>Mature_154_residues
MIIKNLQAFSRLLILNSPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLLSIVEKYKVCGVVIGMPIDMS
GAVTEQTNMVMKFAEEFTKSINLPIYLQDERLTTKAANNFLKSFGMKRKDRDNNDDAVAASMILETVLDSMKNI

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_RICAH (A8GN18)

Other databases:

- EMBL:   CP000847
- RefSeq:   YP_001493301.1
- ProteinModelPortal:   A8GN18
- SMR:   A8GN18
- STRING:   A8GN18
- GeneID:   5645414
- GenomeReviews:   CP000847_GR
- KEGG:   rak:A1C_02470
- NMPDR:   fig|293614.3.peg.459
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   ERSIAMP
- ProtClustDB:   PRK00109
- BioCyc:   RAKA293614:A1C_02470-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 17146; Mature: 17146

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIKNLQAFSRLLILNSPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLL
CCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHH
SIVEKYKVCGVVIGMPIDMSGAVTEQTNMVMKFAEEFTKSINLPIYLQDERLTTKAANNF
HHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH
LKSFGMKRKDRDNNDDAVAASMILETVLDSMKNI
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIIKNLQAFSRLLILNSPLIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLL
CCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHH
SIVEKYKVCGVVIGMPIDMSGAVTEQTNMVMKFAEEFTKSINLPIYLQDERLTTKAANNF
HHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH
LKSFGMKRKDRDNNDDAVAASMILETVLDSMKNI
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA