Definition | Rickettsia akari str. Hartford, complete genome. |
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Accession | NC_009881 |
Length | 1,231,060 |
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The map label for this gene is gltX
Identifier: 157825574
GI number: 157825574
Start: 441926
End: 443269
Strand: Reverse
Name: gltX
Synonym: A1C_02435
Alternate gene names: 157825574
Gene position: 443269-441926 (Counterclockwise)
Preceding gene: 157825575
Following gene: 157825566
Centisome position: 36.01
GC content: 33.85
Gene sequence:
>1344_bases ATGACAAAAGTTATAACACGATTTGCTCCGTCACCGACCGGTATGTTACATGTCGGAAATATCAGGGTAGCATTGCTTAA CTGGCTATATGCAAAGAAACATAACGGGCAGTTTATTTTAAGATTTGACGATACGGATTTAGAGCGTAGTAAACAGGAAT ATAAAGACGCTATAAAAGACGATTTAAAATTTTTAAATCTTCATTGGGATCAGACATTTAATCAATTAAGTCGTTTAAGT AGATATGATGAAATCAAAAATCTATTATTAGATAAAAAAAGATTATATGCATGCTATGAGACTCCAGACGAACTAGAATT AAAGCGTAAATTTCAGTTATCTAAAGGTCTACCGCCGATGTATGACCGTGCTAGCTTAAATCTAACAGAAGAACAAACAG AAAAATATATAGAACAAGGAAGAAACCCGCATTATAGATTTCTGGTAAATCATGAACCGATTAGCTGGCATGATATGATC AAAGGCGAAATTCAATATGACGGCAAGGCTTTAAGCGATCCAATAGTGATAAGAGCGGACGGTAGTATGACATATATGTT ATGCTCGGTTATTGACGATATTGATTATGATATTACTCATATTATTAGGGGTGAAGATCACGTTAGCAATACAGCTATTC AAATTCAAATGTTTGAGGCTTTAAATAATACTCCTACGACTTTTGGACATTTAAGTTTAATAATCAATAAAGATGAGAAA ATTTCTAAACGAGTGGGAGGGTTTGAGATCACAACTCTTAGAAAAGAAATCGGGATCGAAGCTATGGCAATAGCTAGCTT TTTTAGCTTACTTGGTTCATCGGCACAAATCTTGCCTTATAAATCAATGGAGAAGCTAATAAATCAATTTGAGATAAGCA GTTTTTCTAAAAGCCCGACTATTTATCAACCAAAAGATTTAGAAAGATTAAACCATAAATTATTAATAAGTTTAGATTTT GACGAAGTAAAAGACCACCTTAAAGAAATAGATGCCGAGTATATTGATGAAAATTTTTGGTTATCGATAAGACCTAACTT GCAAAAATTACGTGATGTAAAAGACTGGTGGGAAATTTGTCATCACACTCCGAATGTAGAAAGTCTAAATTTAGATCAGG AATATTTAAAACAAGCAGCAGAATTATTACCGCAAGGTGCAATTACTAAAGATAGCTGGAGCATTTGGACTAAAGAAATA ACAAATATAACAGGCAGAAAAGGTAAGGAGCTATTTCTACCTCTTCGCCTTGCTTTAACCGGCAGAGAATCAGGACCGGA AATTGCAGATGTTTTACCTTTGATTAGTAGGGAAGAGATAGTAAAACGATTAACTAGTGCGTAA
Upstream 100 bases:
>100_bases CCGCTCGCAATGACAATTTTCGAGCGATGCAACAATGCCGGCTTGACCACAGCATGACATAGTTCTTTAATAGGATGACA ATTAATAAAATTACTTATTT
Downstream 100 bases:
>100_bases CTCTCTATGTCATTCCTAACTAAAAGCATTATTGCGTGTCTTGAAAAACCTGTTCTATGTCATCCACACGAAAGCTGAGA TCAACTACTTTAAAACTTTT
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase 1; GluRS 1
Number of amino acids: Translated: 447; Mature: 446
Protein sequence:
>447_residues MTKVITRFAPSPTGMLHVGNIRVALLNWLYAKKHNGQFILRFDDTDLERSKQEYKDAIKDDLKFLNLHWDQTFNQLSRLS RYDEIKNLLLDKKRLYACYETPDELELKRKFQLSKGLPPMYDRASLNLTEEQTEKYIEQGRNPHYRFLVNHEPISWHDMI KGEIQYDGKALSDPIVIRADGSMTYMLCSVIDDIDYDITHIIRGEDHVSNTAIQIQMFEALNNTPTTFGHLSLIINKDEK ISKRVGGFEITTLRKEIGIEAMAIASFFSLLGSSAQILPYKSMEKLINQFEISSFSKSPTIYQPKDLERLNHKLLISLDF DEVKDHLKEIDAEYIDENFWLSIRPNLQKLRDVKDWWEICHHTPNVESLNLDQEYLKQAAELLPQGAITKDSWSIWTKEI TNITGRKGKELFLPLRLALTGRESGPEIADVLPLISREEIVKRLTSA
Sequences:
>Translated_447_residues MTKVITRFAPSPTGMLHVGNIRVALLNWLYAKKHNGQFILRFDDTDLERSKQEYKDAIKDDLKFLNLHWDQTFNQLSRLS RYDEIKNLLLDKKRLYACYETPDELELKRKFQLSKGLPPMYDRASLNLTEEQTEKYIEQGRNPHYRFLVNHEPISWHDMI KGEIQYDGKALSDPIVIRADGSMTYMLCSVIDDIDYDITHIIRGEDHVSNTAIQIQMFEALNNTPTTFGHLSLIINKDEK ISKRVGGFEITTLRKEIGIEAMAIASFFSLLGSSAQILPYKSMEKLINQFEISSFSKSPTIYQPKDLERLNHKLLISLDF DEVKDHLKEIDAEYIDENFWLSIRPNLQKLRDVKDWWEICHHTPNVESLNLDQEYLKQAAELLPQGAITKDSWSIWTKEI TNITGRKGKELFLPLRLALTGRESGPEIADVLPLISREEIVKRLTSA >Mature_446_residues TKVITRFAPSPTGMLHVGNIRVALLNWLYAKKHNGQFILRFDDTDLERSKQEYKDAIKDDLKFLNLHWDQTFNQLSRLSR YDEIKNLLLDKKRLYACYETPDELELKRKFQLSKGLPPMYDRASLNLTEEQTEKYIEQGRNPHYRFLVNHEPISWHDMIK GEIQYDGKALSDPIVIRADGSMTYMLCSVIDDIDYDITHIIRGEDHVSNTAIQIQMFEALNNTPTTFGHLSLIINKDEKI SKRVGGFEITTLRKEIGIEAMAIASFFSLLGSSAQILPYKSMEKLINQFEISSFSKSPTIYQPKDLERLNHKLLISLDFD EVKDHLKEIDAEYIDENFWLSIRPNLQKLRDVKDWWEICHHTPNVESLNLDQEYLKQAAELLPQGAITKDSWSIWTKEIT NITGRKGKELFLPLRLALTGRESGPEIADVLPLISREEIVKRLTSA
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI134288884, Length=486, Percent_Identity=25.9259259259259, Blast_Score=166, Evalue=4e-41, Organism=Escherichia coli, GI1788743, Length=339, Percent_Identity=37.7581120943953, Blast_Score=218, Evalue=6e-58, Organism=Escherichia coli, GI226510925, Length=247, Percent_Identity=29.9595141700405, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1786895, Length=147, Percent_Identity=31.9727891156463, Blast_Score=69, Evalue=8e-13, Organism=Caenorhabditis elegans, GI71993394, Length=334, Percent_Identity=31.7365269461078, Blast_Score=169, Evalue=3e-42, Organism=Caenorhabditis elegans, GI17511007, Length=69, Percent_Identity=42.0289855072464, Blast_Score=67, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324540, Length=328, Percent_Identity=33.2317073170732, Blast_Score=155, Evalue=1e-38, Organism=Saccharomyces cerevisiae, GI6321192, Length=236, Percent_Identity=29.6610169491525, Blast_Score=91, Evalue=5e-19, Organism=Saccharomyces cerevisiae, GI6324742, Length=146, Percent_Identity=32.1917808219178, Blast_Score=76, Evalue=9e-15, Organism=Drosophila melanogaster, GI24665321, Length=489, Percent_Identity=27.6073619631902, Blast_Score=149, Evalue=5e-36,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYE1_RICAH (A8GN11)
Other databases:
- EMBL: CP000847 - RefSeq: YP_001493294.1 - ProteinModelPortal: A8GN11 - SMR: A8GN11 - STRING: A8GN11 - GeneID: 5645148 - GenomeReviews: CP000847_GR - KEGG: rak:A1C_02435 - NMPDR: fig|293614.3.peg.452 - eggNOG: COG0008 - HOGENOM: HBG628189 - OMA: PHWRFKL - ProtClustDB: PRK12558 - BioCyc: RAKA293614:A1C_02435-MONOMER - GO: GO:0005737 - HAMAP: MF_00022_B - InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 - Gene3D: G3DSA:1.10.1160.10 - Gene3D: G3DSA:3.40.50.620 - Gene3D: G3DSA:1.10.10.350 - PANTHER: PTHR10119 - PRINTS: PR00987 - TIGRFAMs: TIGR00464
Pfam domain/function: PF00749 tRNA-synt_1c; SSF48163 tRNA-synt_bind
EC number: =6.1.1.17
Molecular weight: Translated: 51874; Mature: 51743
Theoretical pI: Translated: 6.21; Mature: 6.21
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: BINDING 243-243
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKVITRFAPSPTGMLHVGNIRVALLNWLYAKKHNGQFILRFDDTDLERSKQEYKDAIKD CCCCEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHH DLKFLNLHWDQTFNQLSRLSRYDEIKNLLLDKKRLYACYETPDELELKRKFQLSKGLPPM HHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHCCCCCC YDRASLNLTEEQTEKYIEQGRNPHYRFLVNHEPISWHDMIKGEIQYDGKALSDPIVIRAD CCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCHHHHCCCEEEECCEECCCCEEEEEC GSMTYMLCSVIDDIDYDITHIIRGEDHVSNTAIQIQMFEALNNTPTTFGHLSLIINKDEK CCHHHHHHHHHHCCCCCHHEEECCCCCCCCCEEEEEEEHHHCCCCCCEEEEEEEECCCHH ISKRVGGFEITTLRKEIGIEAMAIASFFSLLGSSAQILPYKSMEKLINQFEISSFSKSPT HHHHCCCEEEEEHHHHHCHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCCC IYQPKDLERLNHKLLISLDFDEVKDHLKEIDAEYIDENFWLSIRPNLQKLRDVKDWWEIC CCCCHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHH HHTPNVESLNLDQEYLKQAAELLPQGAITKDSWSIWTKEITNITGRKGKELFLPLRLALT CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEEEE GRESGPEIADVLPLISREEIVKRLTSA CCCCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TKVITRFAPSPTGMLHVGNIRVALLNWLYAKKHNGQFILRFDDTDLERSKQEYKDAIKD CCCEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHH DLKFLNLHWDQTFNQLSRLSRYDEIKNLLLDKKRLYACYETPDELELKRKFQLSKGLPPM HHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHCCCCCC YDRASLNLTEEQTEKYIEQGRNPHYRFLVNHEPISWHDMIKGEIQYDGKALSDPIVIRAD CCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCHHHHCCCEEEECCEECCCCEEEEEC GSMTYMLCSVIDDIDYDITHIIRGEDHVSNTAIQIQMFEALNNTPTTFGHLSLIINKDEK CCHHHHHHHHHHCCCCCHHEEECCCCCCCCCEEEEEEEHHHCCCCCCEEEEEEEECCCHH ISKRVGGFEITTLRKEIGIEAMAIASFFSLLGSSAQILPYKSMEKLINQFEISSFSKSPT HHHHCCCEEEEEHHHHHCHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCCC IYQPKDLERLNHKLLISLDFDEVKDHLKEIDAEYIDENFWLSIRPNLQKLRDVKDWWEIC CCCCHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHH HHTPNVESLNLDQEYLKQAAELLPQGAITKDSWSIWTKEITNITGRKGKELFLPLRLALT CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEEEE GRESGPEIADVLPLISREEIVKRLTSA CCCCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA