Definition | Rickettsia akari str. Hartford, complete genome. |
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Accession | NC_009881 |
Length | 1,231,060 |
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The map label for this gene is ygeR [C]
Identifier: 157825538
GI number: 157825538
Start: 410030
End: 410707
Strand: Direct
Name: ygeR [C]
Synonym: A1C_02235
Alternate gene names: 157825538
Gene position: 410030-410707 (Clockwise)
Preceding gene: 157825536
Following gene: 157825539
Centisome position: 33.31
GC content: 31.42
Gene sequence:
>678_bases ATGTCAGATTTGTTTTCTAATGTAAATAATAGTTTTGTTCAATATATGAAATATCCTGTTGTACTTAGTATCGTTATATG TTTTTGTTTAGTTGCTTGTGTTGAACAGCCGCCTGCTCCAATTGAGTATAAAGTAGGAGATGTAACTGCAAATAATAATT CTACCGCATTAGAACACGATGAGGGGTTGATAGTTCAAAGAACTATGGAAGACGATACCGTATCAGAAAAAGTTAGCGGT ATACTCGAAGAACCAAAGGCGAAAATTATAGAATGTTATAATGATGATATTGAGATTCCTATATCTCGGAATGAATATGA AGAAGAGATAGAGCAGTCAAACTTTGTAAAACCGTTAAACGGTGTAATGCTTACCGAGTTTAAAGACGGTAAAAGTAAAG GGATAGATATTGCAGTTAAAGAATATAGCGACGTTAAATCGATAGCCGCAGGAACGGTAATATATTCAGGTTTTAATAAA CAATTTGGTAATTTAGTAATAGTTAAGTTAGATAAAGACGATTTAGAAGTAGCATATGCGAGTTTAGATGATTTGTTACT TAAAAAAGGTGATAAAATTACTAAAAATAGTGTTATCGGACATGTAAAACATAAGTTATATTTTGCAATGCGTAGAAATA GAATAGCGGTTGATCCGAGTAAATATATAGAATTTTAA
Upstream 100 bases:
>100_bases CAGACTTAAGCTCATAACCTGAGTGATCACTAGCTATGACAATATTATAAGTTTGCATAGTTAATTTTTTGATGGAAAAT AATAACAAAAATTATATACT
Downstream 100 bases:
>100_bases ATGGAAGATATTATTATTCTTACTAAATACTGTGAACCTCAAAATGTTATAGTAAGAAGGAGTGGTAAGGCTAAAAATAT AGCCATACGAATTACGCCTA
Product: membrane proteins related to metalloendopeptidase
Products: NA
Alternate protein names: Membrane-Bound Metallopeptidase
Number of amino acids: Translated: 225; Mature: 224
Protein sequence:
>225_residues MSDLFSNVNNSFVQYMKYPVVLSIVICFCLVACVEQPPAPIEYKVGDVTANNNSTALEHDEGLIVQRTMEDDTVSEKVSG ILEEPKAKIIECYNDDIEIPISRNEYEEEIEQSNFVKPLNGVMLTEFKDGKSKGIDIAVKEYSDVKSIAAGTVIYSGFNK QFGNLVIVKLDKDDLEVAYASLDDLLLKKGDKITKNSVIGHVKHKLYFAMRRNRIAVDPSKYIEF
Sequences:
>Translated_225_residues MSDLFSNVNNSFVQYMKYPVVLSIVICFCLVACVEQPPAPIEYKVGDVTANNNSTALEHDEGLIVQRTMEDDTVSEKVSG ILEEPKAKIIECYNDDIEIPISRNEYEEEIEQSNFVKPLNGVMLTEFKDGKSKGIDIAVKEYSDVKSIAAGTVIYSGFNK QFGNLVIVKLDKDDLEVAYASLDDLLLKKGDKITKNSVIGHVKHKLYFAMRRNRIAVDPSKYIEF >Mature_224_residues SDLFSNVNNSFVQYMKYPVVLSIVICFCLVACVEQPPAPIEYKVGDVTANNNSTALEHDEGLIVQRTMEDDTVSEKVSGI LEEPKAKIIECYNDDIEIPISRNEYEEEIEQSNFVKPLNGVMLTEFKDGKSKGIDIAVKEYSDVKSIAAGTVIYSGFNKQ FGNLVIVKLDKDDLEVAYASLDDLLLKKGDKITKNSVIGHVKHKLYFAMRRNRIAVDPSKYIEF
Specific function: Unknown
COG id: COG0739
COG function: function code M; Membrane proteins related to metalloendopeptidases
Gene ontology:
Cell location: Attached to the membrane by a lipid anchor (Potential) [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25287; Mature: 25156
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDLFSNVNNSFVQYMKYPVVLSIVICFCLVACVEQPPAPIEYKVGDVTANNNSTALEHD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECEEEECCCCCEEECC EGLIVQRTMEDDTVSEKVSGILEEPKAKIIECYNDDIEIPISRNEYEEEIEQSNFVKPLN CCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCCCC GVMLTEFKDGKSKGIDIAVKEYSDVKSIAAGTVIYSGFNKQFGNLVIVKLDKDDLEVAYA CEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHEECCCCCCCCCEEEEEECCCCHHHHHH SLDDLLLKKGDKITKNSVIGHVKHKLYFAMRRNRIAVDPSKYIEF HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHCCC >Mature Secondary Structure SDLFSNVNNSFVQYMKYPVVLSIVICFCLVACVEQPPAPIEYKVGDVTANNNSTALEHD CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECEEEECCCCCEEECC EGLIVQRTMEDDTVSEKVSGILEEPKAKIIECYNDDIEIPISRNEYEEEIEQSNFVKPLN CCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCCCC GVMLTEFKDGKSKGIDIAVKEYSDVKSIAAGTVIYSGFNKQFGNLVIVKLDKDDLEVAYA CEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHEECCCCCCCCCEEEEEECCCCHHHHHH SLDDLLLKKGDKITKNSVIGHVKHKLYFAMRRNRIAVDPSKYIEF HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA