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The map label for this gene is virB9 [H]

Identifier: 157825507

GI number: 157825507

Start: 382294

End: 383046

Strand: Reverse

Name: virB9 [H]

Synonym: A1C_02040

Alternate gene names: 157825507

Gene position: 383046-382294 (Counterclockwise)

Preceding gene: 157825508

Following gene: 157825506

Centisome position: 31.12

GC content: 35.19

Gene sequence:

>753_bases
ATGAAGCCACTAATAATATTTTGTACTTTTATAATACTGACATTAGATGTATTTGCTCTTACTATATCACGACCTCTAGG
TCGAGACCCGCGTCTAAGAGTTATGACTTATAACCCTGACGATGTTTTCAAATTCACAGGATATTACGGCTATCAAGCAA
GTATAGAACTAGCAAGAGATGAGGAAATAGTCAGTATTTCTATGGGAGATACTACTTCATGGCAAATAGTACCTGCCGGT
CATAGGATTTTTATTAAACCGATGGAACCGGATGCTACTACTAATATGACTTTAATTACTAATAAACGGACTTATTTCTT
TGAACTATACGCCGCTGAAACTCTTGATATGCGTGATCCTGAAATGGTCTTTAACGTAAAATTTCTTTATCCGGATGACG
AAAATGACAACATGAGCGGTCATATGCAAACTTTTTCTACTTCCCTAGCAAGTCCCGATCTTACTCATCCTGAAAAATAT
AACTTTAATTACTATATTAGCGGCAATGAAGAAATAGCGCCTGTTAAAATTTTTGATGACGGCGAATTTACTTATCTACA
GTTTAGAGATAAAAACGCTGAAATTTCTGGTATTTTTGCTGTAGATGATTCACTGCGAGAATCTTTAGTAAATTATCGCC
TTGCTCAAGATAATCCTAATATGGTGATACTTGAACAGGTTTTTCCTAAGCTCGCTATACGTAAGGGGAAGAAAATCACA
TGTGTATTTAATCAGTCTTTCAAAGCATATTAA

Upstream 100 bases:

>100_bases
ATGGATTCTATCAGTGCAAGTACATCACCTGATATGCCATTCAATTTTACCGTTACTAGTTACAAGCTAAAGTTATTAAG
GAATAAAAATCAGAAATAAT

Downstream 100 bases:

>100_bases
TGTCTACCAACGTCATTGCGAGGATTGAAGCGACGAAGCAATCCAAAAAATAATTAAAAAAAATTCTGATGTACAAAATT
TTTTACTGGATTGCTTTGTC

Product: VirB9 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MKPLIIFCTFIILTLDVFALTISRPLGRDPRLRVMTYNPDDVFKFTGYYGYQASIELARDEEIVSISMGDTTSWQIVPAG
HRIFIKPMEPDATTNMTLITNKRTYFFELYAAETLDMRDPEMVFNVKFLYPDDENDNMSGHMQTFSTSLASPDLTHPEKY
NFNYYISGNEEIAPVKIFDDGEFTYLQFRDKNAEISGIFAVDDSLRESLVNYRLAQDNPNMVILEQVFPKLAIRKGKKIT
CVFNQSFKAY

Sequences:

>Translated_250_residues
MKPLIIFCTFIILTLDVFALTISRPLGRDPRLRVMTYNPDDVFKFTGYYGYQASIELARDEEIVSISMGDTTSWQIVPAG
HRIFIKPMEPDATTNMTLITNKRTYFFELYAAETLDMRDPEMVFNVKFLYPDDENDNMSGHMQTFSTSLASPDLTHPEKY
NFNYYISGNEEIAPVKIFDDGEFTYLQFRDKNAEISGIFAVDDSLRESLVNYRLAQDNPNMVILEQVFPKLAIRKGKKIT
CVFNQSFKAY
>Mature_250_residues
MKPLIIFCTFIILTLDVFALTISRPLGRDPRLRVMTYNPDDVFKFTGYYGYQASIELARDEEIVSISMGDTTSWQIVPAG
HRIFIKPMEPDATTNMTLITNKRTYFFELYAAETLDMRDPEMVFNVKFLYPDDENDNMSGHMQTFSTSLASPDLTHPEKY
NFNYYISGNEEIAPVKIFDDGEFTYLQFRDKNAEISGIFAVDDSLRESLVNYRLAQDNPNMVILEQVFPKLAIRKGKKIT
CVFNQSFKAY

Specific function: Component of the type IV secretion system virB/virD4 which could be a major virulence determinant for subversion of human endothelial cell (HEC) function [H]

COG id: COG3504

COG function: function code U; Type IV secretory pathway, VirB9 components

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbG/virB9 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010258
- InterPro:   IPR014148 [H]

Pfam domain/function: PF03524 CagX [H]

EC number: NA

Molecular weight: Translated: 28876; Mature: 28876

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLIIFCTFIILTLDVFALTISRPLGRDPRLRVMTYNPDDVFKFTGYYGYQASIELARD
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEECEEEEEEEECC
EEIVSISMGDTTSWQIVPAGHRIFIKPMEPDATTNMTLITNKRTYFFELYAAETLDMRDP
CEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEEEEECCCEEEEEEEEEEECCCCCC
EMVFNVKFLYPDDENDNMSGHMQTFSTSLASPDLTHPEKYNFNYYISGNEEIAPVKIFDD
CEEEEEEEEECCCCCCCCCCCCEEEEHHHCCCCCCCCCEECEEEEECCCCCEEEEEEEEC
GEFTYLQFRDKNAEISGIFAVDDSLRESLVNYRLAQDNPNMVILEQVFPKLAIRKGKKIT
CCEEEEEEECCCCCEEEEEEECHHHHHHHHHEEEECCCCCEEEHHHHHHHHHHCCCCEEE
CVFNQSFKAY
EEECCCCCCC
>Mature Secondary Structure
MKPLIIFCTFIILTLDVFALTISRPLGRDPRLRVMTYNPDDVFKFTGYYGYQASIELARD
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEECEEEEEEEECC
EEIVSISMGDTTSWQIVPAGHRIFIKPMEPDATTNMTLITNKRTYFFELYAAETLDMRDP
CEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEEEEECCCEEEEEEEEEEECCCCCC
EMVFNVKFLYPDDENDNMSGHMQTFSTSLASPDLTHPEKYNFNYYISGNEEIAPVKIFDD
CEEEEEEEEECCCCCCCCCCCCEEEEHHHCCCCCCCCCEECEEEEECCCCCEEEEEEEEC
GEFTYLQFRDKNAEISGIFAVDDSLRESLVNYRLAQDNPNMVILEQVFPKLAIRKGKKIT
CCEEEEEEECCCCCEEEEEEECHHHHHHHHHEEEECCCCCEEEHHHHHHHHHHCCCCEEE
CVFNQSFKAY
EEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA