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The map label for this gene is rbsD

Identifier: 157373132

GI number: 157373132

Start: 5437861

End: 5438280

Strand: Reverse

Name: rbsD

Synonym: Spro_4901

Alternate gene names: 157373132

Gene position: 5438280-5437861 (Counterclockwise)

Preceding gene: 157373133

Following gene: 157373131

Centisome position: 99.81

GC content: 55.48

Gene sequence:

>420_bases
ATGAAAAAAGGCGTGCTGCTGAATGCTGATGTTTCTGCCGTGGTTTCCCGCCTCGGCCATACCGACCAGATCGTCATCTG
TGATGCGGGGTTGCCTATTCCGGCGGCAACGCAGCGTATCGATCTGGCGCTGACCCAGGGTGTACCGACGTTTTTGCAGG
TGCTCGGGGTAGTGACGCAGGAAATGCAGGTAGAGAGCGCCATTCTGGCGGAAGAGATAGTTAAACAAAATCCGCAGCTC
CATCGTGCGTTGTTGGCTCAACTGACCGAACTTGGCCAACACCAGGGCAATACCATCAGCGTGAGCTATATCAGCCACAG
TGCGTTCAAAGCGCAAACTGAACATAGCCGGGCAGTGATCCGCAGCGGGGAATGTTCGCCGTATGCGAATGTCATCCTCT
GCGCCGGCGTAACTTTCTGA

Upstream 100 bases:

>100_bases
TAGCGATCACATTTCTGCACTGTCCCGGTTGCCTTCTGTTGGCGTTTTTTTAAACTCCAGACACAAGCGAAACGTTTCGC
TGGTGGAGTGAGAAGAAAAA

Downstream 100 bases:

>100_bases
GGCATTTATGCAACCTTTACTGCAACTGAAAGGGATCGATAAAGCCTTTCCCGGCGTGAAGGCGCTTTCCGGCGCCGCAC
TCAGCGTTTATCCCGGCAAG

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MKKGVLLNADVSAVVSRLGHTDQIVICDAGLPIPAATQRIDLALTQGVPTFLQVLGVVTQEMQVESAILAEEIVKQNPQL
HRALLAQLTELGQHQGNTISVSYISHSAFKAQTEHSRAVIRSGECSPYANVILCAGVTF

Sequences:

>Translated_139_residues
MKKGVLLNADVSAVVSRLGHTDQIVICDAGLPIPAATQRIDLALTQGVPTFLQVLGVVTQEMQVESAILAEEIVKQNPQL
HRALLAQLTELGQHQGNTISVSYISHSAFKAQTEHSRAVIRSGECSPYANVILCAGVTF
>Mature_139_residues
MKKGVLLNADVSAVVSRLGHTDQIVICDAGLPIPAATQRIDLALTQGVPTFLQVLGVVTQEMQVESAILAEEIVKQNPQL
HRALLAQLTELGQHQGNTISVSYISHSAFKAQTEHSRAVIRSGECSPYANVILCAGVTF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=70.5035971223022, Blast_Score=217, Evalue=2e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_SERP5 (A8GLK3)

Other databases:

- EMBL:   CP000826
- RefSeq:   YP_001481121.1
- ProteinModelPortal:   A8GLK3
- SMR:   A8GLK3
- STRING:   A8GLK3
- GeneID:   5603308
- GenomeReviews:   CP000826_GR
- KEGG:   spe:Spro_4901
- eggNOG:   COG1869
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- ProtClustDB:   PRK11797
- BioCyc:   SPRO399741:SPRO_4901-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 14857; Mature: 14857

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 106-106

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKGVLLNADVSAVVSRLGHTDQIVICDAGLPIPAATQRIDLALTQGVPTFLQVLGVVTQ
CCCCEEECCCHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
EMQVESAILAEEIVKQNPQLHRALLAQLTELGQHQGNTISVSYISHSAFKAQTEHSRAVI
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHH
RSGECSPYANVILCAGVTF
CCCCCCCCCCEEEEECCCC
>Mature Secondary Structure
MKKGVLLNADVSAVVSRLGHTDQIVICDAGLPIPAATQRIDLALTQGVPTFLQVLGVVTQ
CCCCEEECCCHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
EMQVESAILAEEIVKQNPQLHRALLAQLTELGQHQGNTISVSYISHSAFKAQTEHSRAVI
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHH
RSGECSPYANVILCAGVTF
CCCCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA