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The map label for this gene is rbsC [H]

Identifier: 157373130

GI number: 157373130

Start: 5435376

End: 5436341

Strand: Reverse

Name: rbsC [H]

Synonym: Spro_4899

Alternate gene names: 157373130

Gene position: 5436341-5435376 (Counterclockwise)

Preceding gene: 157373131

Following gene: 157373129

Centisome position: 99.77

GC content: 57.14

Gene sequence:

>966_bases
ATGAGTTCCCAGAGTGCGGCAAAACGCTGGTTCAGTAAAGAGTGGCTGTTAGAGCAAAAATCACTGATTGCTCTGCTGGT
GCTGATCGCCGTGGTCTCTTCAATGAGCCCGAATTTCTTCACCGTAAACAACCTGTTCAATATTCTGCAGCAAACCTCGG
TGAACGCCATTATGGCGGTGGGGATGACCTTGGTGATCCTCACTTCCGGCATCGATCTGTCGGTGGGATCGCTGCTGGCG
CTGACCGGTGCGGTGGCGGCGTCGATCGTCGGTTTTGAAGTTAACGCGGTGGTGGCTGTGGCGGCAGCGCTGGCATTGGG
GGCGGCAGTCGGCGCCTGTACCGGGGTGATCGTGGCCAAAGGCAAGGTGCAGGCGTTTATCGCCACTCTGGTGATGATGC
TGTTGTTGCGCGGCGTCACCATGGTCTACACCAACGGCAGCCCGGTGAATACCGGCTTTACCGACGTGGCCGATACCTTC
GGCTGGTTCGGCATCGGCCGTCCGCTGGGTGTTCCCACGCCAATCTGGATTATGGCGATCGTGTTTATCGCCGCCTGGTA
CATGCTGCACCATACTCGTCTGGGCCGTTATATTTATGCTCTGGGCGGTAACGAAGCGGCGACCCGCCTGTCCGGCATCA
GCGTCGATAAAGTGAAGATTATCGTTTATTCGCTTTGTGGACTGCTGGCGGCGTTGGCGGGGGTGATCGAAGTGGCACGC
CTGTCTTCCGCGCAGCCAACCGCCGGTACCGGCTATGAGTTGGACGCCATTGCCGCGGTGGTGCTGGGTGGTACCAGCCT
GGCCGGTGGCAAGGGCCGTATTGTTGGTACGTTGATCGGGGCACTGATCCTTGGCTTCCTGAACAACGGTCTGAATTTAC
TGGGTGTTTCTTCCTACTACCAAATGATCGTGAAGGCAGTGGTGATACTGCTGGCGGTTCTGGTAGAGAACAAAAGCAAC
AAATAA

Upstream 100 bases:

>100_bases
ACATCTCAGCGGTGAATTCCCGATTGAACAGGCCACCCAGGAAGCGTTGATGGCTGCGGCCGTTGGCAAGCAATACGGCG
TAAAGCAGGAGTAATCAGAT

Downstream 100 bases:

>100_bases
CCTCCCCCTACAGGAATCACGATGATGAAAATGAAAAAACTGGCAATTCTGGCTTCAGCCTTCGCGCTGAGCGCCTCCCT
TAGTGCTAACGCGCTGGCTA

Product: ribose ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 320

Protein sequence:

>321_residues
MSSQSAAKRWFSKEWLLEQKSLIALLVLIAVVSSMSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLA
LTGAVAASIVGFEVNAVVAVAAALALGAAVGACTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTDVADTF
GWFGIGRPLGVPTPIWIMAIVFIAAWYMLHHTRLGRYIYALGGNEAATRLSGISVDKVKIIVYSLCGLLAALAGVIEVAR
LSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVENKSN
K

Sequences:

>Translated_321_residues
MSSQSAAKRWFSKEWLLEQKSLIALLVLIAVVSSMSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLA
LTGAVAASIVGFEVNAVVAVAAALALGAAVGACTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTDVADTF
GWFGIGRPLGVPTPIWIMAIVFIAAWYMLHHTRLGRYIYALGGNEAATRLSGISVDKVKIIVYSLCGLLAALAGVIEVAR
LSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVENKSN
K
>Mature_320_residues
SSQSAAKRWFSKEWLLEQKSLIALLVLIAVVSSMSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLAL
TGAVAASIVGFEVNAVVAVAAALALGAAVGACTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTDVADTFG
WFGIGRPLGVPTPIWIMAIVFIAAWYMLHHTRLGRYIYALGGNEAATRLSGISVDKVKIIVYSLCGLLAALAGVIEVARL
SSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVENKSNK

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=321, Percent_Identity=89.4080996884735, Blast_Score=540, Evalue=1e-155,
Organism=Escherichia coli, GI1788896, Length=317, Percent_Identity=39.4321766561514, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1790524, Length=325, Percent_Identity=37.8461538461538, Blast_Score=187, Evalue=7e-49,
Organism=Escherichia coli, GI145693152, Length=321, Percent_Identity=36.1370716510903, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1789992, Length=343, Percent_Identity=34.9854227405248, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI87082395, Length=300, Percent_Identity=37.3333333333333, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI145693214, Length=329, Percent_Identity=37.3860182370821, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1788471, Length=321, Percent_Identity=35.5140186915888, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1787793, Length=285, Percent_Identity=32.6315789473684, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787794, Length=292, Percent_Identity=30.1369863013699, Blast_Score=98, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33292; Mature: 33161

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSQSAAKRWFSKEWLLEQKSLIALLVLIAVVSSMSPNFFTVNNLFNILQQTSVNAIMAV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHH
GMTLVILTSGIDLSVGSLLALTGAVAASIVGFEVNAVVAVAAALALGAAVGACTGVIVAK
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
GKVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTDVADTFGWFGIGRPLGVPTPIWIMAI
CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
VFIAAWYMLHHTRLGRYIYALGGNEAATRLSGISVDKVKIIVYSLCGLLAALAGVIEVAR
HHHHHHHHHHHHHHHHEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYY
HCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHH
QMIVKAVVILLAVLVENKSNK
HHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SSQSAAKRWFSKEWLLEQKSLIALLVLIAVVSSMSPNFFTVNNLFNILQQTSVNAIMAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHH
GMTLVILTSGIDLSVGSLLALTGAVAASIVGFEVNAVVAVAAALALGAAVGACTGVIVAK
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
GKVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTDVADTFGWFGIGRPLGVPTPIWIMAI
CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
VFIAAWYMLHHTRLGRYIYALGGNEAATRLSGISVDKVKIIVYSLCGLLAALAGVIEVAR
HHHHHHHHHHHHHHHHEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYY
HCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHH
QMIVKAVVILLAVLVENKSNK
HHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]