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The map label for this gene is rbsB [H]

Identifier: 157373129

GI number: 157373129

Start: 5434464

End: 5435354

Strand: Reverse

Name: rbsB [H]

Synonym: Spro_4898

Alternate gene names: 157373129

Gene position: 5435354-5434464 (Counterclockwise)

Preceding gene: 157373130

Following gene: 157373128

Centisome position: 99.75

GC content: 55.89

Gene sequence:

>891_bases
ATGATGAAAATGAAAAAACTGGCAATTCTGGCTTCAGCCTTCGCGCTGAGCGCCTCCCTTAGTGCTAACGCGCTGGCTAA
AGACACCATCGCGCTGGTGGTTTCTACCCTGAATAACCCGTTCTTTGTCTCAATGAAAGAGGGCGCACAGCAGGAAGCCA
ATAAGCTGGGTTACAACCTGGTGGTGCTGGACTCGCAAAATAACCCGGCGAAAGAACTGGCGAACGTACAGGATCTGATG
GTGCAGGCGCCCAAGTTGCTGCTGATTAACCCAACCGACTCCGATGCGGTCGGCAACGCCATCAAGATGGCTAACCAGGC
CAAGATCCCGGTCATTACCCTGGACCGTGTGGCGAGCAAAGGTGAAGTGGTCAGCCATATCGCTTCTGATAACCGCGTCG
GCGGTAAAATGGCCGGTGACTTTATCGCTAAAAAAGTGGGTACGGACGCTAAAGTGATCCAGCTGGAAGGGATCGCCGGT
ACCTCCGCCGCCCGTGAACGTGGCGAAGGCTTTAAACAGTCGCTGGATCAGAACAAATTCAAACTGCTGGCCAGCCAGCC
GGCAGACTTCGACCGTACCAAGGGCCTGAACGTGATGCAGAACCTGCTGACCGCTCACCCGGACGTACAGGCGGTATTTG
CCCAGAATGATGAAATGGCGCTGGGTGCACTGCGTGCGTTGCAAACCGCCGGTAAAACCGACGTGGTCGTGGTAGGCTTC
GACGGCACCGCTGACGGCGTGAAAGCGGTTGAAGGCGGCAAACTGGCGGCGACCGTGGCGCAGCGCCCGGATCAGATCGG
CGTGATTGGTGTGGAAACGGCGGATAAAGTGTTGAAAGGCGAAAAAGTGCCGGCCACTATCCCGGTTGATCTGAAACTGG
TCACTAAATAA

Upstream 100 bases:

>100_bases
TTCTTCCTACTACCAAATGATCGTGAAGGCAGTGGTGATACTGCTGGCGGTTCTGGTAGAGAACAAAAGCAACAAATAAC
CTCCCCCTACAGGAATCACG

Downstream 100 bases:

>100_bases
CACTCTGTAGCACCAGCGCCATCAAAACGGGGCGTTTATGATGGCGCACAATTCAGGAATCAATGCGATGGCAACAGGTA
AGCTGGTGGTTTTGGGCAGT

Product: D-ribose transporter subunit RbsB

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MMKMKKLAILASAFALSASLSANALAKDTIALVVSTLNNPFFVSMKEGAQQEANKLGYNLVVLDSQNNPAKELANVQDLM
VQAPKLLLINPTDSDAVGNAIKMANQAKIPVITLDRVASKGEVVSHIASDNRVGGKMAGDFIAKKVGTDAKVIQLEGIAG
TSAARERGEGFKQSLDQNKFKLLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKTDVVVVGF
DGTADGVKAVEGGKLAATVAQRPDQIGVIGVETADKVLKGEKVPATIPVDLKLVTK

Sequences:

>Translated_296_residues
MMKMKKLAILASAFALSASLSANALAKDTIALVVSTLNNPFFVSMKEGAQQEANKLGYNLVVLDSQNNPAKELANVQDLM
VQAPKLLLINPTDSDAVGNAIKMANQAKIPVITLDRVASKGEVVSHIASDNRVGGKMAGDFIAKKVGTDAKVIQLEGIAG
TSAARERGEGFKQSLDQNKFKLLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKTDVVVVGF
DGTADGVKAVEGGKLAATVAQRPDQIGVIGVETADKVLKGEKVPATIPVDLKLVTK
>Mature_296_residues
MMKMKKLAILASAFALSASLSANALAKDTIALVVSTLNNPFFVSMKEGAQQEANKLGYNLVVLDSQNNPAKELANVQDLM
VQAPKLLLINPTDSDAVGNAIKMANQAKIPVITLDRVASKGEVVSHIASDNRVGGKMAGDFIAKKVGTDAKVIQLEGIAG
TSAARERGEGFKQSLDQNKFKLLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKTDVVVVGF
DGTADGVKAVEGGKLAATVAQRPDQIGVIGVETADKVLKGEKVPATIPVDLKLVTK

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=295, Percent_Identity=82.3728813559322, Blast_Score=481, Evalue=1e-137,
Organism=Escherichia coli, GI1790526, Length=295, Percent_Identity=34.5762711864407, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1790674, Length=230, Percent_Identity=31.7391304347826, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1790194, Length=245, Percent_Identity=26.9387755102041, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1788473, Length=278, Percent_Identity=27.3381294964029, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787948, Length=297, Percent_Identity=23.9057239057239, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 31056; Mature: 31056

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKMKKLAILASAFALSASLSANALAKDTIALVVSTLNNPFFVSMKEGAQQEANKLGYNL
CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCEE
VVLDSQNNPAKELANVQDLMVQAPKLLLINPTDSDAVGNAIKMANQAKIPVITLDRVASK
EEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHCCC
GEVVSHIASDNRVGGKMAGDFIAKKVGTDAKVIQLEGIAGTSAARERGEGFKQSLDQNKF
CHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCHHHHHHCCCCE
KLLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKTDVVVVGF
EEEECCCCCCCHHCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEC
DGTADGVKAVEGGKLAATVAQRPDQIGVIGVETADKVLKGEKVPATIPVDLKLVTK
CCCCCCCEECCCCEEEEHHHCCCCCEEEEEECHHHHHHCCCCCCEECCEEEEEECC
>Mature Secondary Structure
MMKMKKLAILASAFALSASLSANALAKDTIALVVSTLNNPFFVSMKEGAQQEANKLGYNL
CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCEE
VVLDSQNNPAKELANVQDLMVQAPKLLLINPTDSDAVGNAIKMANQAKIPVITLDRVASK
EEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHCCC
GEVVSHIASDNRVGGKMAGDFIAKKVGTDAKVIQLEGIAGTSAARERGEGFKQSLDQNKF
CHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCHHHHHHCCCCE
KLLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKTDVVVVGF
EEEECCCCCCCHHCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEC
DGTADGVKAVEGGKLAATVAQRPDQIGVIGVETADKVLKGEKVPATIPVDLKLVTK
CCCCCCCEECCCCEEEEHHHCCCCCEEEEEECHHHHHHCCCCCCEECCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]