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The map label for this gene is radC [C]

Identifier: 157373074

GI number: 157373074

Start: 5361028

End: 5361711

Strand: Reverse

Name: radC [C]

Synonym: Spro_4842

Alternate gene names: 157373074

Gene position: 5361711-5361028 (Counterclockwise)

Preceding gene: 157373078

Following gene: 157373073

Centisome position: 98.4

GC content: 51.46

Gene sequence:

>684_bases
ATGAGCAGTCAGGGAATCACCTTGTGGCCGGACACGCTGGCACCACGGGAGAAACTATTGCGTTACGGAGCATCGGCACT
GTCTGATGCGGAGCTGTTGGCCATTTTTCTGCGCACCGGTTTTCCGGGGGTGCACGTCATGCAACTGGCTGAACAGTTGT
TGGAGCAGTTTGGCTCGTTGTATCACCTGATGTCGGCGGATCATTCGGTTTTTTGCAGCCACAAAGGGCTGGGCAACTCC
AGTTATTCGCAACTGCAGGCGATTTCCGAGTTGGCGTTTCGCTTCTTTTCCAGCCATCTGGCGCAGGAAAATGCCATGCT
TAACCCCAGGATGACCCAGCATTATTTGCAAAGTTTGCTGGTTCATCATGAGCGGGAAGTGTTTTTGGTATTGTTTTTAG
ACAATCAGCACCGTGTTATTCGCCATCAGGAGATGTTTGCTGGTACCATCAGCAGCGTTGTCGTATACCCGAGAGAAATT
GTGCGTGAAGCGTTGAAGGCTAATGCGGCCGCCATTATTCTGGCGCATAATCACCCTTCGGGTAAGGCGGAACCCAGTCA
TGCCGATCGTTTGATAACCGAGCAAGTGGTTAATGCCTGCCTGTTATTGGAAATCCGAGTGCTCGATCATTTGGTGATAG
GTCGGGGTGAATGTGTCTCTTTTGCCGAGCGCGGATGGCTTTAA

Upstream 100 bases:

>100_bases
CGTTACATTGTGCTTTGCGCAGTACTTCGCAATGTTATCAAACACCTGTCGTTGGCCTCTCCGCCGCGTGGCATGCTGTG
GCGTTTTCAGGGAGGCGAAG

Downstream 100 bases:

>100_bases
GCGATTTTTTCGCGATCCTTCTGGGATCTTTAGCTGTTCGGGACTTGAGCACTTACGCTTCAGAGCGTATACTACGCCAC
CTTTGAGAATCTTGGGTTTG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MSSQGITLWPDTLAPREKLLRYGASALSDAELLAIFLRTGFPGVHVMQLAEQLLEQFGSLYHLMSADHSVFCSHKGLGNS
SYSQLQAISELAFRFFSSHLAQENAMLNPRMTQHYLQSLLVHHEREVFLVLFLDNQHRVIRHQEMFAGTISSVVVYPREI
VREALKANAAAIILAHNHPSGKAEPSHADRLITEQVVNACLLLEIRVLDHLVIGRGECVSFAERGWL

Sequences:

>Translated_227_residues
MSSQGITLWPDTLAPREKLLRYGASALSDAELLAIFLRTGFPGVHVMQLAEQLLEQFGSLYHLMSADHSVFCSHKGLGNS
SYSQLQAISELAFRFFSSHLAQENAMLNPRMTQHYLQSLLVHHEREVFLVLFLDNQHRVIRHQEMFAGTISSVVVYPREI
VREALKANAAAIILAHNHPSGKAEPSHADRLITEQVVNACLLLEIRVLDHLVIGRGECVSFAERGWL
>Mature_226_residues
SSQGITLWPDTLAPREKLLRYGASALSDAELLAIFLRTGFPGVHVMQLAEQLLEQFGSLYHLMSADHSVFCSHKGLGNSS
YSQLQAISELAFRFFSSHLAQENAMLNPRMTQHYLQSLLVHHEREVFLVLFLDNQHRVIRHQEMFAGTISSVVVYPREIV
REALKANAAAIILAHNHPSGKAEPSHADRLITEQVVNACLLLEIRVLDHLVIGRGECVSFAERGWL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family. YicR subfamily

Homologues:

Organism=Escherichia coli, GI87082300, Length=215, Percent_Identity=55.8139534883721, Blast_Score=268, Evalue=2e-73,
Organism=Escherichia coli, GI1788997, Length=137, Percent_Identity=45.2554744525547, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1788312, Length=143, Percent_Identity=44.0559440559441, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI2367100, Length=104, Percent_Identity=53.8461538461538, Blast_Score=120, Evalue=9e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4842_SERP5 (A8GLE5)

Other databases:

- EMBL:   CP000826
- RefSeq:   YP_001481063.1
- ProteinModelPortal:   A8GLE5
- SMR:   A8GLE5
- STRING:   A8GLE5
- GeneID:   5603510
- GenomeReviews:   CP000826_GR
- KEGG:   spe:Spro_4842
- eggNOG:   COG2003
- HOGENOM:   HBG751042
- OMA:   LDHLILG
- ProtClustDB:   PRK00024
- BioCyc:   SPRO399741:SPRO_4842-MONOMER
- HAMAP:   MF_00018
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- InterPro:   IPR022820
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25476; Mature: 25344

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSQGITLWPDTLAPREKLLRYGASALSDAELLAIFLRTGFPGVHVMQLAEQLLEQFGSL
CCCCCCEECCCCCCHHHHHHHHCHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
YHLMSADHSVFCSHKGLGNSSYSQLQAISELAFRFFSSHLAQENAMLNPRMTQHYLQSLL
HHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
VHHEREVFLVLFLDNQHRVIRHQEMFAGTISSVVVYPREIVREALKANAAAIILAHNHPS
HHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEECCCC
GKAEPSHADRLITEQVVNACLLLEIRVLDHLVIGRGECVSFAERGWL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC
>Mature Secondary Structure 
SSQGITLWPDTLAPREKLLRYGASALSDAELLAIFLRTGFPGVHVMQLAEQLLEQFGSL
CCCCCEECCCCCCHHHHHHHHCHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
YHLMSADHSVFCSHKGLGNSSYSQLQAISELAFRFFSSHLAQENAMLNPRMTQHYLQSLL
HHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
VHHEREVFLVLFLDNQHRVIRHQEMFAGTISSVVVYPREIVREALKANAAAIILAHNHPS
HHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEECCCC
GKAEPSHADRLITEQVVNACLLLEIRVLDHLVIGRGECVSFAERGWL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA