| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is licR [H]
Identifier: 157372605
GI number: 157372605
Start: 4839722
End: 4841638
Strand: Reverse
Name: licR [H]
Synonym: Spro_4372
Alternate gene names: 157372605
Gene position: 4841638-4839722 (Counterclockwise)
Preceding gene: 157372606
Following gene: 157372593
Centisome position: 88.86
GC content: 54.77
Gene sequence:
>1917_bases ATGGTGCGATTTCCCTACCCGCGTTTGGCCTATCTGTTTGATGCTTTGCAGTCAGAGACTTTGCCGCAGGAAGAGCTGGC GAAGCGCTTCGCTGTTTCCACCCGAACCGTGCGTGCCGACATCACCGCGCTGAACGATATTCTGGAAAACTACGGTGCCC ACTTCGTGCATAGCCGTGGGGCGGGTTATCGCCTGCAGGTCGATGACGCCGTACTGTTTAGCGCCATGCAACATCAGGAA CGTAAAAAACACGCCACGCCACGCAGCGCGCAGGAACGGGTGCACTATTTGCTGATTCGTTTTCTGACCTCAGCCTTTTC TCTGAAACTTGAAGATTTAGCCGATGAATGGTTTGTCAGCCGTGGCACGCTGCAAAACGACATGGCTGAGGTAAGAGAGC GTCTGGCGCACTACCAATTGACCATTGAAACCAAACCGCGCTACGGCATGAAGCTGTTTGGTTCGGAGATGGCGATCCGC GCCTGTCTGACCGATCTGTTATTCCAACTGCACCTGGCCGATGCCGAAAATCCGCTGCTCAACAATGAGATCCTGCGTCA ACCGCAGGTGACGACCTTTGCCGGTTTGCTGCATCCGTTGCTGTCGCAATATGCCATTCGTTTGACAGACGAAGGTGAGC AGTATCTGATTTTCTATTGTGCAGTGGCGCTGCAACGCATTACCGATGGTTATCCGCTGCCGGACTTTGACGTTGAGGAC GGGGATGACGCGGTGCGCAAGGTTTCGACCTGGCTGGCCGGGGAACTGCGTAAAGCCAGTGGCAAAGAGATATCGATAGC GGAAGAGGCCTACCTGCGGGTGAACATTGCTGCGCGGCGGGTGCAGGAGGTGCAACCTACCGAGATCAACGCCGACGATG AAGAAGCGCTGGTGGATTACATTCTGTCGTATATCAACGCGCACTATAACTACAATCTGCAGGGTGACAAGCAGCTGCGT GCCGATCTGCTGACCCATATCAAGACCATGATCACCCGGGTGAAATACCAGATTAATATCCCCAACCCGCTGCTGGCGAA CATTAAACAGCACTACCCAATGGCCTATGACGTGACGCTGGCCGCGGTCTCCAGCTGGGGGAAATATACGCCCTACACCC TGAGTGAAAACGAGATCGGTTATCTGGTACTGCACATTGGCGTTGGGCTGGAGCGGCATTACAACATCGGCTATGAGCGA CACCCGCAGGTGATGCTGGTGTGCGATACCGGTAACTCGACGGTGCGGATGATCCAGGCGCAGATCGCACGCAAATATCC ACAACTGGTGATGACGCGCATCGTTTCACTGCGAGATTACGAGGTGCTCAGCCATATCGACGAAGACTTCGTTATTTCCA ATGCGCGGGTTAGCGAAAAGAACAAGCCGGTGGTGGTGATGTCGCCGTTCCCGACCGAATACCAGCTCGAACAGCTCGGC AAACTGGTGCTGGTGGATCGTACCAAGCCCTATATGCTGGAGAAGTTCTTCGACGCCGAGCATTTTATGTTGGTCAATGA ACCGCTGACCCAGGCGGAATTATTCCAGCAGGTGTGCCGCCAGCTTGAGCAAGAAGGCTATGTTGGCGAAGATTTTTACC CTTCAGTGGTCGAGCGCGAGGCGATTGTTTCTACCCTGCTGGGTGAAGGGATTGCGCTGCCGCACTCGCTGGGGTTGCTG GCGAAAAAAACCGTCGTGGTGACGCTGCTGGCGCCACAGGGGGTGGCCTGGGGTGAAGGTGAAATTGCCCACGTGATTTT CCTGCTGGCGATCAGCAAGAGCGATTACGAAGAGGCGATGGCAATCTACGATCTGTTCGTCACCTTTGTGCGCGAACGTT CGATGAGTCGCCTGTTGGGCAGTGATAATTTCGACAGTTTCAAGGCGGTGGCGCTGGACTGTTTAAGTAGGATCTAG
Upstream 100 bases:
>100_bases GCCGGTGGGCAGCCCCTCGCAAATGGTGTTCTTGCCGGTGGCGAAGTAACCCGTTGCCCGCCTGATTCCCCAGGCGGGCA CCTTAATTGACGGAAAGAGA
Downstream 100 bases:
>100_bases CTGCAGGAATGATGTGTTGTAAAGTAGGTGCGCTGCATGTAGCGCACCTGACTCTTTAGTCTTCGTCAAAACCGGAATTG ATCAACTCAATTACCGCCGC
Product: transcriptional antiterminator, BglG
Products: NA
Alternate protein names: Putative phosphotransferase enzyme IIB component; Putative PTS system EIIB component; Putative phosphotransferase enzyme IIA component; Putative PTS system EIIA component [H]
Number of amino acids: Translated: 638; Mature: 638
Protein sequence:
>638_residues MVRFPYPRLAYLFDALQSETLPQEELAKRFAVSTRTVRADITALNDILENYGAHFVHSRGAGYRLQVDDAVLFSAMQHQE RKKHATPRSAQERVHYLLIRFLTSAFSLKLEDLADEWFVSRGTLQNDMAEVRERLAHYQLTIETKPRYGMKLFGSEMAIR ACLTDLLFQLHLADAENPLLNNEILRQPQVTTFAGLLHPLLSQYAIRLTDEGEQYLIFYCAVALQRITDGYPLPDFDVED GDDAVRKVSTWLAGELRKASGKEISIAEEAYLRVNIAARRVQEVQPTEINADDEEALVDYILSYINAHYNYNLQGDKQLR ADLLTHIKTMITRVKYQINIPNPLLANIKQHYPMAYDVTLAAVSSWGKYTPYTLSENEIGYLVLHIGVGLERHYNIGYER HPQVMLVCDTGNSTVRMIQAQIARKYPQLVMTRIVSLRDYEVLSHIDEDFVISNARVSEKNKPVVVMSPFPTEYQLEQLG KLVLVDRTKPYMLEKFFDAEHFMLVNEPLTQAELFQQVCRQLEQEGYVGEDFYPSVVEREAIVSTLLGEGIALPHSLGLL AKKTVVVTLLAPQGVAWGEGEIAHVIFLLAISKSDYEEAMAIYDLFVTFVRERSMSRLLGSDNFDSFKAVALDCLSRI
Sequences:
>Translated_638_residues MVRFPYPRLAYLFDALQSETLPQEELAKRFAVSTRTVRADITALNDILENYGAHFVHSRGAGYRLQVDDAVLFSAMQHQE RKKHATPRSAQERVHYLLIRFLTSAFSLKLEDLADEWFVSRGTLQNDMAEVRERLAHYQLTIETKPRYGMKLFGSEMAIR ACLTDLLFQLHLADAENPLLNNEILRQPQVTTFAGLLHPLLSQYAIRLTDEGEQYLIFYCAVALQRITDGYPLPDFDVED GDDAVRKVSTWLAGELRKASGKEISIAEEAYLRVNIAARRVQEVQPTEINADDEEALVDYILSYINAHYNYNLQGDKQLR ADLLTHIKTMITRVKYQINIPNPLLANIKQHYPMAYDVTLAAVSSWGKYTPYTLSENEIGYLVLHIGVGLERHYNIGYER HPQVMLVCDTGNSTVRMIQAQIARKYPQLVMTRIVSLRDYEVLSHIDEDFVISNARVSEKNKPVVVMSPFPTEYQLEQLG KLVLVDRTKPYMLEKFFDAEHFMLVNEPLTQAELFQQVCRQLEQEGYVGEDFYPSVVEREAIVSTLLGEGIALPHSLGLL AKKTVVVTLLAPQGVAWGEGEIAHVIFLLAISKSDYEEAMAIYDLFVTFVRERSMSRLLGSDNFDSFKAVALDCLSRI >Mature_638_residues MVRFPYPRLAYLFDALQSETLPQEELAKRFAVSTRTVRADITALNDILENYGAHFVHSRGAGYRLQVDDAVLFSAMQHQE RKKHATPRSAQERVHYLLIRFLTSAFSLKLEDLADEWFVSRGTLQNDMAEVRERLAHYQLTIETKPRYGMKLFGSEMAIR ACLTDLLFQLHLADAENPLLNNEILRQPQVTTFAGLLHPLLSQYAIRLTDEGEQYLIFYCAVALQRITDGYPLPDFDVED GDDAVRKVSTWLAGELRKASGKEISIAEEAYLRVNIAARRVQEVQPTEINADDEEALVDYILSYINAHYNYNLQGDKQLR ADLLTHIKTMITRVKYQINIPNPLLANIKQHYPMAYDVTLAAVSSWGKYTPYTLSENEIGYLVLHIGVGLERHYNIGYER HPQVMLVCDTGNSTVRMIQAQIARKYPQLVMTRIVSLRDYEVLSHIDEDFVISNARVSEKNKPVVVMSPFPTEYQLEQLG KLVLVDRTKPYMLEKFFDAEHFMLVNEPLTQAELFQQVCRQLEQEGYVGEDFYPSVVEREAIVSTLLGEGIALPHSLGLL AKKTVVVTLLAPQGVAWGEGEIAHVIFLLAISKSDYEEAMAIYDLFVTFVRERSMSRLLGSDNFDSFKAVALDCLSRI
Specific function: Positive regulator of the licABCH operon [H]
COG id: COG3711
COG function: function code K; Transcriptional antiterminator
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIB type-2 domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013196 - InterPro: IPR007737 - InterPro: IPR011608 - InterPro: IPR016152 - InterPro: IPR002178 - InterPro: IPR013011 - InterPro: IPR003501 - InterPro: IPR011991 [H]
Pfam domain/function: PF08279 HTH_11; PF05043 Mga; PF00874 PRD; PF00359 PTS_EIIA_2; PF02302 PTS_IIB [H]
EC number: =2.7.1.69 [H]
Molecular weight: Translated: 72749; Mature: 72749
Theoretical pI: Translated: 5.41; Mature: 5.41
Prosite motif: PS00894 HTH_DEOR_1 ; PS51094 PTS_EIIA_TYPE_2 ; PS51099 PTS_EIIB_TYPE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVRFPYPRLAYLFDALQSETLPQEELAKRFAVSTRTVRADITALNDILENYGAHFVHSRG CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC AGYRLQVDDAVLFSAMQHQERKKHATPRSAQERVHYLLIRFLTSAFSLKLEDLADEWFVS CCEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RGTLQNDMAEVRERLAHYQLTIETKPRYGMKLFGSEMAIRACLTDLLFQLHLADAENPLL CCCHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC NNEILRQPQVTTFAGLLHPLLSQYAIRLTDEGEQYLIFYCAVALQRITDGYPLPDFDVED CHHHHCCCCHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC GDDAVRKVSTWLAGELRKASGKEISIAEEAYLRVNIAARRVQEVQPTEINADDEEALVDY CHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHEEEHHHHHHHHHCCCCCCCCCHHHHHHHH ILSYINAHYNYNLQGDKQLRADLLTHIKTMITRVKYQINIPNPLLANIKQHYPMAYDVTL HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCCEEHHHH AAVSSWGKYTPYTLSENEIGYLVLHIGVGLERHYNIGYERHPQVMLVCDTGNSTVRMIQA HHHHCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH QIARKYPQLVMTRIVSLRDYEVLSHIDEDFVISNARVSEKNKPVVVMSPFPTEYQLEQLG HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCEECCCCCCEEEECCCCCHHHHHHCC KLVLVDRTKPYMLEKFFDAEHFMLVNEPLTQAELFQQVCRQLEQEGYVGEDFYPSVVERE CEEEEECCCHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH AIVSTLLGEGIALPHSLGLLAKKTVVVTLLAPQGVAWGEGEIAHVIFLLAISKSDYEEAM HHHHHHHHCCCCCCHHHHHHHCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCHHHHH AIYDLFVTFVRERSMSRLLGSDNFDSFKAVALDCLSRI HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure MVRFPYPRLAYLFDALQSETLPQEELAKRFAVSTRTVRADITALNDILENYGAHFVHSRG CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC AGYRLQVDDAVLFSAMQHQERKKHATPRSAQERVHYLLIRFLTSAFSLKLEDLADEWFVS CCEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RGTLQNDMAEVRERLAHYQLTIETKPRYGMKLFGSEMAIRACLTDLLFQLHLADAENPLL CCCHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC NNEILRQPQVTTFAGLLHPLLSQYAIRLTDEGEQYLIFYCAVALQRITDGYPLPDFDVED CHHHHCCCCHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC GDDAVRKVSTWLAGELRKASGKEISIAEEAYLRVNIAARRVQEVQPTEINADDEEALVDY CHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHEEEHHHHHHHHHCCCCCCCCCHHHHHHHH ILSYINAHYNYNLQGDKQLRADLLTHIKTMITRVKYQINIPNPLLANIKQHYPMAYDVTL HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCCEEHHHH AAVSSWGKYTPYTLSENEIGYLVLHIGVGLERHYNIGYERHPQVMLVCDTGNSTVRMIQA HHHHCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH QIARKYPQLVMTRIVSLRDYEVLSHIDEDFVISNARVSEKNKPVVVMSPFPTEYQLEQLG HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCEECCCCCCEEEECCCCCHHHHHHCC KLVLVDRTKPYMLEKFFDAEHFMLVNEPLTQAELFQQVCRQLEQEGYVGEDFYPSVVERE CEEEEECCCHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH AIVSTLLGEGIALPHSLGLLAKKTVVVTLLAPQGVAWGEGEIAHVIFLLAISKSDYEEAM HHHHHHHHCCCCCCHHHHHHHCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCHHHHH AIYDLFVTFVRERSMSRLLGSDNFDSFKAVALDCLSRI HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8990303; 8969509; 9384377; 10438772 [H]