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The map label for this gene is lptC [H]

Identifier: 157372597

GI number: 157372597

Start: 4834173

End: 4834751

Strand: Direct

Name: lptC [H]

Synonym: Spro_4364

Alternate gene names: 157372597

Gene position: 4834173-4834751 (Clockwise)

Preceding gene: 157372596

Following gene: 157372598

Centisome position: 88.72

GC content: 51.3

Gene sequence:

>579_bases
ATGAGTAAAACCAAACTTTGGATCACCATCCTGCTGGCGGTGATCGCATTGGCGCTGATTGGCTGGAACATGACTGATGT
CAATGATGATGCCATGCCGGGACCGGCTAACAGTAAAGACCCGACTTATCAGAGCCAGCACACGGTCACCATAGTGTACA
ATCCGACCGGCAAGCTGAGCTATAAGCTGGTGGCGGAAGACGTAAAGTACTATGAGGCCGACGAATTAAGCTGGTTTACC
CAGCCGGTGATGACGCTGTTTGATGAAAACGCGGTGGCCACCTGGTCAGTTCGCGCCGATCGCGCCAAACTGACTAAAGA
CCGGATGCTGTATCTTTACGGCCATGTCGAGGTGAACAGCCTGACCACCACCTCGCAGCTGGAAAAAATTAAAACAGACA
ATGCTCAGGTGAACCTGGTGACCCAGGATGTGGCTTCGGATGACGAAGTGACGCTCTATGGGACGAACTTCACCTCTAAC
GGCATGAAAATGCGTGGGAACCTGCGGGCCAAAACCGCTGAGCTGATTGATAAGGTTAAGACCAACTATGAAATTCAGAA
CCAACAAACCAAGCCGTAA

Upstream 100 bases:

>100_bases
ATATTACCCGCATTGCCGGCGGCCGCGGTGCGGTGCGCGAGCTGTGTGACATTATTCTTTTGGCTCAGAACAAGCTGGAG
GACGCCAAAGGGCTGTCGAT

Downstream 100 bases:

>100_bases
TTTGTTGATCGGCAGCTTGATTTTGGCCGCCAGCGCACCCGCCTGGGCGCTGAAGTCCGACTCCAGCCAACCGGTAAGCA
TTGACTCACTGAAACAGTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSKTKLWITILLAVIALALIGWNMTDVNDDAMPGPANSKDPTYQSQHTVTIVYNPTGKLSYKLVAEDVKYYEADELSWFT
QPVMTLFDENAVATWSVRADRAKLTKDRMLYLYGHVEVNSLTTTSQLEKIKTDNAQVNLVTQDVASDDEVTLYGTNFTSN
GMKMRGNLRAKTAELIDKVKTNYEIQNQQTKP

Sequences:

>Translated_192_residues
MSKTKLWITILLAVIALALIGWNMTDVNDDAMPGPANSKDPTYQSQHTVTIVYNPTGKLSYKLVAEDVKYYEADELSWFT
QPVMTLFDENAVATWSVRADRAKLTKDRMLYLYGHVEVNSLTTTSQLEKIKTDNAQVNLVTQDVASDDEVTLYGTNFTSN
GMKMRGNLRAKTAELIDKVKTNYEIQNQQTKP
>Mature_191_residues
SKTKLWITILLAVIALALIGWNMTDVNDDAMPGPANSKDPTYQSQHTVTIVYNPTGKLSYKLVAEDVKYYEADELSWFTQ
PVMTLFDENAVATWSVRADRAKLTKDRMLYLYGHVEVNSLTTTSQLEKIKTDNAQVNLVTQDVASDDEVTLYGTNFTSNG
MKMRGNLRAKTAELIDKVKTNYEIQNQQTKP

Specific function: Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG3117

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptC family [H]

Homologues:

Organism=Escherichia coli, GI1789591, Length=192, Percent_Identity=61.9791666666667, Blast_Score=255, Evalue=1e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010664 [H]

Pfam domain/function: PF06835 DUF1239 [H]

EC number: NA

Molecular weight: Translated: 21651; Mature: 21520

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTKLWITILLAVIALALIGWNMTDVNDDAMPGPANSKDPTYQSQHTVTIVYNPTGKLS
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEE
YKLVAEDVKYYEADELSWFTQPVMTLFDENAVATWSVRADRAKLTKDRMLYLYGHVEVNS
EEEEECHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHCCCCEEEEEEEEEEECC
LTTTSQLEKIKTDNAQVNLVTQDVASDDEVTLYGTNFTSNGMKMRGNLRAKTAELIDKVK
CCCHHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCCCCCCEEEECCCCHHHHHHHHHHH
TNYEIQNQQTKP
CCEEECCCCCCC
>Mature Secondary Structure 
SKTKLWITILLAVIALALIGWNMTDVNDDAMPGPANSKDPTYQSQHTVTIVYNPTGKLS
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEE
YKLVAEDVKYYEADELSWFTQPVMTLFDENAVATWSVRADRAKLTKDRMLYLYGHVEVNS
EEEEECHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHCCCCEEEEEEEEEEECC
LTTTSQLEKIKTDNAQVNLVTQDVASDDEVTLYGTNFTSNGMKMRGNLRAKTAELIDKVK
CCCHHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCCCCCCEEEECCCCHHHHHHHHHHH
TNYEIQNQQTKP
CCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]