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The map label for this gene is yhaJ [H]

Identifier: 157372566

GI number: 157372566

Start: 4800863

End: 4801768

Strand: Reverse

Name: yhaJ [H]

Synonym: Spro_4333

Alternate gene names: 157372566

Gene position: 4801768-4800863 (Counterclockwise)

Preceding gene: 157372568

Following gene: 157372554

Centisome position: 88.12

GC content: 58.61

Gene sequence:

>906_bases
ATGGCCAGAGATCGGGCGTTAACGCTTGAAGCGTTAAGGGTTATGGATGCGATTGACCGACGTGGCAGCTTCGCTGCGGC
AGCCGATGAGCTGGGGCGCGTGCCTTCGGCGCTCAGCTACACCATGCAAAAATTGGAAGAAGAATTGGACGTGGTGCTGT
TCGACCGCTCCGGGCACCGTACCAAGTTCACCAACGTCGGACGTATGCTGCTGGAGCGCGGACGGGTACTTCTGGAGGCG
GCAGACAAGCTGACCACCGATGCCGAAGCGCTGGCACGCGGCTGGGAAACTCACCTGACGATTGTCAGCGAGGCGCTATC
ACCCCCGAGCAAACTGTTTCCGCTGGTCGATAAACTCGCGCTGAAGGCCAATACCCAGGTGTCGATCTTGACCGAAGTGC
TGGCCGGTGCCTGGGAAAGGCTGGAGCAGGGGCGAGCGGATATTGTTATCGCTCCGGATATGCATTTCCGCGCGTCGTCC
GAAATCAATACGCGTAAGCTGTACAAGGTGATGAGCGTGTATGTGGCCGCACCGGGTCATCCAATCCACCTGGAACCGGA
GCCGCTGTCTGAAGTGACGCGCGTGAAGTACCGCGGTATTGCGGTCGCGGATACCGCACGGGAACGCCCGGTACTGACGG
TGCAATTGTTGGATAAACAGCAGCGGCTAACGGTCAGCACCATTGAAGACAAGCGCCTGGCTTTGCTGGCAGGGCTGGGT
GTGGCGACCATGCCTTACCCGATGGTCGAGAAAGACATTGAAGAAGGGCGTCTGCGTGTTGTGGGGCCGGAATACAGCCG
CGAAGTTGACATCATTATGGCCTGGCGACGTGACAGCATGGGTGAGGCAAAGGCTTGGTTCCTGCGCGAAATTCCGCGTC
TGTTTGCACAGTTGGAACGACAGTAA

Upstream 100 bases:

>100_bases
GGCTCTCTAAATTCATTATCTAGATGGTAAGCATCTGGACGGCGGATTGTTAGCCAGTTAATCTGGTCGGTATATTCAAA
TTTCCTGACAGAGAGATTCG

Downstream 100 bases:

>100_bases
AACTCCCTCTTGCCGTTAAGCAAAAGGGAGGTGTGCGTTAACCAAAACGCCGGTCGCGGCCGTGTGGCTCATCCAAATCT
TGCGCCGGCCCGATAGAAAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MARDRALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEA
ADKLTTDAEALARGWETHLTIVSEALSPPSKLFPLVDKLALKANTQVSILTEVLAGAWERLEQGRADIVIAPDMHFRASS
EINTRKLYKVMSVYVAAPGHPIHLEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQQRLTVSTIEDKRLALLAGLG
VATMPYPMVEKDIEEGRLRVVGPEYSREVDIIMAWRRDSMGEAKAWFLREIPRLFAQLERQ

Sequences:

>Translated_301_residues
MARDRALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEA
ADKLTTDAEALARGWETHLTIVSEALSPPSKLFPLVDKLALKANTQVSILTEVLAGAWERLEQGRADIVIAPDMHFRASS
EINTRKLYKVMSVYVAAPGHPIHLEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQQRLTVSTIEDKRLALLAGLG
VATMPYPMVEKDIEEGRLRVVGPEYSREVDIIMAWRRDSMGEAKAWFLREIPRLFAQLERQ
>Mature_300_residues
ARDRALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAA
DKLTTDAEALARGWETHLTIVSEALSPPSKLFPLVDKLALKANTQVSILTEVLAGAWERLEQGRADIVIAPDMHFRASSE
INTRKLYKVMSVYVAAPGHPIHLEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQQRLTVSTIEDKRLALLAGLGV
ATMPYPMVEKDIEEGRLRVVGPEYSREVDIIMAWRRDSMGEAKAWFLREIPRLFAQLERQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789492, Length=295, Percent_Identity=89.4915254237288, Blast_Score=536, Evalue=1e-154,
Organism=Escherichia coli, GI87082024, Length=287, Percent_Identity=38.3275261324042, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1787949, Length=280, Percent_Identity=29.2857142857143, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1786508, Length=294, Percent_Identity=27.5510204081633, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1786713, Length=292, Percent_Identity=26.7123287671233, Blast_Score=89, Evalue=5e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33839; Mature: 33707

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARDRALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHR
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEECCCCCC
TKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIVSEALSPPSKLFPLVDKLA
CHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHH
LKANTQVSILTEVLAGAWERLEQGRADIVIAPDMHFRASSEINTRKLYKVMSVYVAAPGH
HHCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
PIHLEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQQRLTVSTIEDKRLALLAGLG
EEECCCCCHHHHHHHHHCCEEEECCCCCCCEEEEEECCCCCCEEEEECCCHHHHHHHCCC
VATMPYPMVEKDIEEGRLRVVGPEYSREVDIIMAWRRDSMGEAKAWFLREIPRLFAQLER
HHHCCCHHHHHHHCCCCEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
Q
C
>Mature Secondary Structure 
ARDRALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHR
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEECCCCCC
TKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIVSEALSPPSKLFPLVDKLA
CHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHH
LKANTQVSILTEVLAGAWERLEQGRADIVIAPDMHFRASSEINTRKLYKVMSVYVAAPGH
HHCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
PIHLEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQQRLTVSTIEDKRLALLAGLG
EEECCCCCHHHHHHHHHCCEEEECCCCCCCEEEEEECCCCCCEEEEECCCHHHHHHHCCC
VATMPYPMVEKDIEEGRLRVVGPEYSREVDIIMAWRRDSMGEAKAWFLREIPRLFAQLER
HHHCCCHHHHHHHCCCCEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]