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The map label for this gene is yubA [H]

Identifier: 157372355

GI number: 157372355

Start: 4577486

End: 4578409

Strand: Reverse

Name: yubA [H]

Synonym: Spro_4121

Alternate gene names: 157372355

Gene position: 4578409-4577486 (Counterclockwise)

Preceding gene: 157372356

Following gene: 157372353

Centisome position: 84.03

GC content: 53.79

Gene sequence:

>924_bases
GTGTCTAACTGGTGCAAAAACCGTTTAGTTGTTACCGGCCAATCCGTGTTTGTCGACGAGCTGCAGCAATGGGTGAATGG
CCATGTTGTGCCTGACTACCGTCATGCTATTCAACAGAGCTGCAGACTGTTCCTGGCAGGGTGCGCCGGCATACTCAAAC
CGGCCACGGTAAAACCCGGTGTATACGCCCCGTATCCGGGGCTACTGGCCCATCCGGGGGTTGCGTCGACACAGAACCTG
GCTTTTGAACAATGGTTCGGTTTGCTGAAAGCTGATGTGCCGTTGACAGGGGAGAATGTTCGATTAATCGAACGTCTCTA
CCGTCAGTCCGGTATCGATGCCGTTAAATGGGAGAACATCCCGGTTGTGGCGAAAGAACGGATTGCTGACGTGCTTGTCC
GGCAATATGCAGACTGGTTCGGGCTCGTTGGTTTGGGGCCGGATATCGATGTTGGTAACTGCTGGGAACGTCTGGGCACT
ATGCCCGAGTACACCGCACCGTGCGACATGTTGATGTTGATCCCAACGCGGCTGGCGACGGAACTGAATGGGGCTGGTAG
CCTGTTGCGTGACGTTCTGACAACTGCGGAGCTTTACGGTCGCCAGTACGGGGTCGAATGGCCGTCTGGTCATAGTGTTG
GGTGTGTGCGAGACGGTATCAACACATTGACAGTGCACTTTGACTCACCATGGTACCCGCCTGCAGGCGAGGTTATCGGG
ATACTGTCTGAACAGTTCAGTTGCCAGGTGGAACATTGCTGGTATATGGCTGATGCGCAACGCAGTGGCTATGACCGCTA
CGATCGTGGCGAGCATGTTGATGGTAGACGAATATCGACAGAAGCCACTGAAAGTGAAGTGATTTACCTGACTTATGCAG
ACAAGGATTCAGTGCCGTTGTCATCCAATTCAGCAGATGGCTAA

Upstream 100 bases:

>100_bases
TTGTCCTGACCATCATGATGTAACACCTAACCCAACGGGGGAGACTTTCCCCCAATGGGGGATGTCTCTCCTTTTTTCTT
GAAAGAAGAGGAGAACTACC

Downstream 100 bases:

>100_bases
TCGCCGGCTTTTGTTAGCACGTCAACCTATGGCCACCGATGTTCGGTGGTCTTTTTTTTGCCGTGGGGAAGTTTCCCCAC
TACGAGTGGAGAAATTGTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MSNWCKNRLVVTGQSVFVDELQQWVNGHVVPDYRHAIQQSCRLFLAGCAGILKPATVKPGVYAPYPGLLAHPGVASTQNL
AFEQWFGLLKADVPLTGENVRLIERLYRQSGIDAVKWENIPVVAKERIADVLVRQYADWFGLVGLGPDIDVGNCWERLGT
MPEYTAPCDMLMLIPTRLATELNGAGSLLRDVLTTAELYGRQYGVEWPSGHSVGCVRDGINTLTVHFDSPWYPPAGEVIG
ILSEQFSCQVEHCWYMADAQRSGYDRYDRGEHVDGRRISTEATESEVIYLTYADKDSVPLSSNSADG

Sequences:

>Translated_307_residues
MSNWCKNRLVVTGQSVFVDELQQWVNGHVVPDYRHAIQQSCRLFLAGCAGILKPATVKPGVYAPYPGLLAHPGVASTQNL
AFEQWFGLLKADVPLTGENVRLIERLYRQSGIDAVKWENIPVVAKERIADVLVRQYADWFGLVGLGPDIDVGNCWERLGT
MPEYTAPCDMLMLIPTRLATELNGAGSLLRDVLTTAELYGRQYGVEWPSGHSVGCVRDGINTLTVHFDSPWYPPAGEVIG
ILSEQFSCQVEHCWYMADAQRSGYDRYDRGEHVDGRRISTEATESEVIYLTYADKDSVPLSSNSADG
>Mature_306_residues
SNWCKNRLVVTGQSVFVDELQQWVNGHVVPDYRHAIQQSCRLFLAGCAGILKPATVKPGVYAPYPGLLAHPGVASTQNLA
FEQWFGLLKADVPLTGENVRLIERLYRQSGIDAVKWENIPVVAKERIADVLVRQYADWFGLVGLGPDIDVGNCWERLGTM
PEYTAPCDMLMLIPTRLATELNGAGSLLRDVLTTAELYGRQYGVEWPSGHSVGCVRDGINTLTVHFDSPWYPPAGEVIGI
LSEQFSCQVEHCWYMADAQRSGYDRYDRGEHVDGRRISTEATESEVIYLTYADKDSVPLSSNSADG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023136
- InterPro:   IPR009694 [H]

Pfam domain/function: PF06924 DUF1281 [H]

EC number: NA

Molecular weight: Translated: 34071; Mature: 33940

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNWCKNRLVVTGQSVFVDELQQWVNGHVVPDYRHAIQQSCRLFLAGCAGILKPATVKPG
CCCCCCCCEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VYAPYPGLLAHPGVASTQNLAFEQWFGLLKADVPLTGENVRLIERLYRQSGIDAVKWENI
CCCCCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEECCC
PVVAKERIADVLVRQYADWFGLVGLGPDIDVGNCWERLGTMPEYTAPCDMLMLIPTRLAT
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
ELNGAGSLLRDVLTTAELYGRQYGVEWPSGHSVGCVRDGINTLTVHFDSPWYPPAGEVIG
HCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCEEEEEEECCCCCCCHHHHHH
ILSEQFSCQVEHCWYMADAQRSGYDRYDRGEHVDGRRISTEATESEVIYLTYADKDSVPL
HHHHHHCCCHHHEEEEECHHHCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCCC
SSNSADG
CCCCCCC
>Mature Secondary Structure 
SNWCKNRLVVTGQSVFVDELQQWVNGHVVPDYRHAIQQSCRLFLAGCAGILKPATVKPG
CCCCCCCEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VYAPYPGLLAHPGVASTQNLAFEQWFGLLKADVPLTGENVRLIERLYRQSGIDAVKWENI
CCCCCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEECCC
PVVAKERIADVLVRQYADWFGLVGLGPDIDVGNCWERLGTMPEYTAPCDMLMLIPTRLAT
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
ELNGAGSLLRDVLTTAELYGRQYGVEWPSGHSVGCVRDGINTLTVHFDSPWYPPAGEVIG
HCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCEEEEEEECCCCCCCHHHHHH
ILSEQFSCQVEHCWYMADAQRSGYDRYDRGEHVDGRRISTEATESEVIYLTYADKDSVPL
HHHHHHCCCHHHEEEEECHHHCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCCC
SSNSADG
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10366527 [H]