| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is traC [H]
Identifier: 157372116
GI number: 157372116
Start: 4298787
End: 4301576
Strand: Reverse
Name: traC [H]
Synonym: Spro_3881
Alternate gene names: 157372116
Gene position: 4301576-4298787 (Counterclockwise)
Preceding gene: 157372117
Following gene: 157372115
Centisome position: 78.94
GC content: 57.24
Gene sequence:
>2790_bases ATGATGCGTAACATTGACCTGATCCGCGAAGTGACCAAATCAGCAGCCAACCGCTGGCCTGATGTGTTGCCGATGATGGG GATCGACGTTCCCGCTAGTCCACGTGCGCAAGTGGCATGTCCTGCTTGTGGCGGGCGTGATCGGTTTCGGTTCGATGATA ACGGGCGCGGCTCGCATTTCTGCAACCAATGTGGAGCTGGTGACGGGTTAGATCTCATCCAGAAAGTAAACCGGTGCGAC GCCACCGAAGCCGCTCGTATGGTTGCTGATGTGCTGGGTATTGATTACCGGGCAGCAGATACCGGATCAGGCGCCACCAG CCAAAGCAAGGCAGCAATCGAAGCCGAGCGCCAACAACGTGAGCAGGATCGCCAGCAAGCAGAAGCCGCAGAGCATGAGC GGAAGCGTCAGCAGTTTAACCGGCGCTGGCAATCACTGACTGTCGATGCAGTGGAAAGAGAGCCTGAATATCTTAAGGCC AAGGGGCTGACCGGCGTCACCTTCCCCACACTGAAAGATGGCCGCTTGCTGGTGGCCTTGACCGATGAAACAGGCGCAGT CACGGCAGCACAGACCATCACCCCCGCAGGTGAGAAACGTCAGGTAACGGACGGCACTAAGCGCGGCTCATCCCATACCC TGGCCGGTGGACCAGAGCACCCACAGGCGGTGATTATTGGTGAAGGGTTGGCAACTACCCTAACCGCTCACCTGATACGC CCTGACGCGCTGGCGGTAGCCGCGATCGATGCCGGGAACCTATTACATGTAGCGGAGGCGATGCACCGCCGGTATCCAGA CGCGCAAATCATCATTGCAGGGGATAACGACCACCACGAACCGGGCGAACTGGACGAGCACGGTAGGCCGAGGAAGAACG CGGGCCGGATCTCAGCAGAGAAAGCCGCTGCTGCTGTCGCTGGGTGGGTATCAATACCACCGACAGAGTACAAGGCTGAT TGGGATGATTATCGCCAACAGAACGGGATAGAAGCCGCTGTACTGGCGTTTAACAATTCACTGTGTCAACCCAAGGGGGA AGGCGTGAGCGTCCAACTGGAAGCCATTGAGGGTGGTAAAAAAGACCACCAAGAGGCTGACCCGCTAAAACCTCGCATTG AGAGCCGTAAGGATGGTGTTTTCTGGATCACGCCGAAGGTAGACCAGGTGAGCGGTGAGGTTATCAACAATGAATCGTGG TTGTGTTCACCGTTGGAAGTGATCGGCACCGGCAGGGACGACAAAGACCAATACCTGATTATTCGCTGGTTACCGGTAGG CGAAACCTTGCCAACAACCGCAGCCATACCACTGGCCGACATTGGCGAGCGCGAAGGCTGGCGCACGTTGAAAGCGGGTG GGGTGAATGTGACCACGAAAACCGCACTCAGGGCAACCCTGGCCGACTGGTTCCAACGTGCTGGCTCTCATGAGATTTGG CGAGTGGCGCAAGCTACGGGTTGGCAGTGCGGGGCATACATCATGCCGGATGGTGAGGTCATTGGTTCACCTGAAAGGCC GGTACTGTTCAATGGCCGCAGTGCTGCCGCTGCCGGGTATACCGTCAAAGGAACGCCGGAAGGGTGGCGTGATTCGGTGG CACGTTTGGCGAGGGGGAATCCCTCCATGATGGCCGGTATCGGTGCGGCATTGGCTGCCCCACTAATTGGGCTGGCCGGT GCCGATGGGTTTGGTATCCACTTTTACGAGCAATCCAGTGCAGGCAAGACCACCACCGCCAATATTGCCAGCAGTCTGTA CGGTGAGCCGGACGCCTTGCGCCTGACGTGGTTCGGTACAGCGTTAGGGATAGCCAACGAGGCCGCAGCACATAACGATG GCCTGATGCCGCTGGATGAAGTGGGGCAAGGCGCTGATCCGGATAGCGTGGCGAAATCGGCCTACACTCTGTTTAACGGC GTGGGTAAGCTCCAAGGGGCCAAAGAGGGCGGCAACCGCGATTTGAAGCGCTGGCGTACCGTGGCGCTCAGTACCGGGGA AATGGATATTGAAACCTTCATCGCCACTGCTGGACGAAAGGTGAAAGCTGGGCAGTTGGTACGGCTGTTGAATATCCCGT TGGAAAAAGCGCATCAGTTCCATGGTACGGCAAACGGTAAGGCTCATGCCGATGCATTGAAAGATGCCTTCCAAAGCCAC TACGGGGCCGCTGGACGTTACTGGATCAAGTACCTTGCCGACCACCAGCAACAGGCCATTGCCGCGGTGAGAGAGGCAGA GAGCCGCTGGCGATCACTGATACCGGCAGACTATGGGGAGCAGGTCCACCGTGTGGCGGCTCGGTTCGCTGTACTGGAAG CGGCGTTGCTGCTGGGGCGTGCGGTTACCGGCTGGGATGAGCAAGAATGCCGGGACGCGATACAGCACAACTTCAACGCC TGGATCAAAGAGTTCGGTACCGGAAACAAAGAACACCAGCAGATCATCGAGCAGACGGAAGCGTTCCTGAATGCCTACGG TTTGAGTCGGTTCGCACCACTACCTTATGATTCGCAGTGCATGCCTATTCGTGATTTGGCCGGCTACAGGGATAAGGGTA AGCATGATAGTGATGCCATGGTGTTCTACACGTTTCCTGCAGCGTTTGAGGATGAGATAGCGCGAGGGTTCAATTCGAAG CATTTTGCCAAAGCTCTGGCAGGGGCTGGAATGCTGACACTGCCAGCCAGTGGGCGGGGTTTTCAACGTAAATCGCCGCG TATCGATGGGCGACAGATTAACGTATACGTGATCCATCACCTGCCAGAAGGTGAGCAAGTAGAAGAGTAA
Upstream 100 bases:
>100_bases AAATGCCTAGACGATGGCAACCTGACACCGCGAGGTTTGGTAGTCTGGCAGTGCATAAAGAAAGATATGTACGCGACTGT ATTGGGCAATGGGGGACGGC
Downstream 100 bases:
>100_bases AGTCTCTACGTGCGATAAAAACATGTTGGTTCAGTCAGTTCAGTTGGTTCAATTTGTAAAGATGATTGTTTTGTAAAGTA ATTATTATTCATTTTGAACT
Product: P4 alpha zinc-binding domain-containing protein
Products: NA
Alternate protein names: Replication primase [H]
Number of amino acids: Translated: 929; Mature: 929
Protein sequence:
>929_residues MMRNIDLIREVTKSAANRWPDVLPMMGIDVPASPRAQVACPACGGRDRFRFDDNGRGSHFCNQCGAGDGLDLIQKVNRCD ATEAARMVADVLGIDYRAADTGSGATSQSKAAIEAERQQREQDRQQAEAAEHERKRQQFNRRWQSLTVDAVEREPEYLKA KGLTGVTFPTLKDGRLLVALTDETGAVTAAQTITPAGEKRQVTDGTKRGSSHTLAGGPEHPQAVIIGEGLATTLTAHLIR PDALAVAAIDAGNLLHVAEAMHRRYPDAQIIIAGDNDHHEPGELDEHGRPRKNAGRISAEKAAAAVAGWVSIPPTEYKAD WDDYRQQNGIEAAVLAFNNSLCQPKGEGVSVQLEAIEGGKKDHQEADPLKPRIESRKDGVFWITPKVDQVSGEVINNESW LCSPLEVIGTGRDDKDQYLIIRWLPVGETLPTTAAIPLADIGEREGWRTLKAGGVNVTTKTALRATLADWFQRAGSHEIW RVAQATGWQCGAYIMPDGEVIGSPERPVLFNGRSAAAAGYTVKGTPEGWRDSVARLARGNPSMMAGIGAALAAPLIGLAG ADGFGIHFYEQSSAGKTTTANIASSLYGEPDALRLTWFGTALGIANEAAAHNDGLMPLDEVGQGADPDSVAKSAYTLFNG VGKLQGAKEGGNRDLKRWRTVALSTGEMDIETFIATAGRKVKAGQLVRLLNIPLEKAHQFHGTANGKAHADALKDAFQSH YGAAGRYWIKYLADHQQQAIAAVREAESRWRSLIPADYGEQVHRVAARFAVLEAALLLGRAVTGWDEQECRDAIQHNFNA WIKEFGTGNKEHQQIIEQTEAFLNAYGLSRFAPLPYDSQCMPIRDLAGYRDKGKHDSDAMVFYTFPAAFEDEIARGFNSK HFAKALAGAGMLTLPASGRGFQRKSPRIDGRQINVYVIHHLPEGEQVEE
Sequences:
>Translated_929_residues MMRNIDLIREVTKSAANRWPDVLPMMGIDVPASPRAQVACPACGGRDRFRFDDNGRGSHFCNQCGAGDGLDLIQKVNRCD ATEAARMVADVLGIDYRAADTGSGATSQSKAAIEAERQQREQDRQQAEAAEHERKRQQFNRRWQSLTVDAVEREPEYLKA KGLTGVTFPTLKDGRLLVALTDETGAVTAAQTITPAGEKRQVTDGTKRGSSHTLAGGPEHPQAVIIGEGLATTLTAHLIR PDALAVAAIDAGNLLHVAEAMHRRYPDAQIIIAGDNDHHEPGELDEHGRPRKNAGRISAEKAAAAVAGWVSIPPTEYKAD WDDYRQQNGIEAAVLAFNNSLCQPKGEGVSVQLEAIEGGKKDHQEADPLKPRIESRKDGVFWITPKVDQVSGEVINNESW LCSPLEVIGTGRDDKDQYLIIRWLPVGETLPTTAAIPLADIGEREGWRTLKAGGVNVTTKTALRATLADWFQRAGSHEIW RVAQATGWQCGAYIMPDGEVIGSPERPVLFNGRSAAAAGYTVKGTPEGWRDSVARLARGNPSMMAGIGAALAAPLIGLAG ADGFGIHFYEQSSAGKTTTANIASSLYGEPDALRLTWFGTALGIANEAAAHNDGLMPLDEVGQGADPDSVAKSAYTLFNG VGKLQGAKEGGNRDLKRWRTVALSTGEMDIETFIATAGRKVKAGQLVRLLNIPLEKAHQFHGTANGKAHADALKDAFQSH YGAAGRYWIKYLADHQQQAIAAVREAESRWRSLIPADYGEQVHRVAARFAVLEAALLLGRAVTGWDEQECRDAIQHNFNA WIKEFGTGNKEHQQIIEQTEAFLNAYGLSRFAPLPYDSQCMPIRDLAGYRDKGKHDSDAMVFYTFPAAFEDEIARGFNSK HFAKALAGAGMLTLPASGRGFQRKSPRIDGRQINVYVIHHLPEGEQVEE >Mature_929_residues MMRNIDLIREVTKSAANRWPDVLPMMGIDVPASPRAQVACPACGGRDRFRFDDNGRGSHFCNQCGAGDGLDLIQKVNRCD ATEAARMVADVLGIDYRAADTGSGATSQSKAAIEAERQQREQDRQQAEAAEHERKRQQFNRRWQSLTVDAVEREPEYLKA KGLTGVTFPTLKDGRLLVALTDETGAVTAAQTITPAGEKRQVTDGTKRGSSHTLAGGPEHPQAVIIGEGLATTLTAHLIR PDALAVAAIDAGNLLHVAEAMHRRYPDAQIIIAGDNDHHEPGELDEHGRPRKNAGRISAEKAAAAVAGWVSIPPTEYKAD WDDYRQQNGIEAAVLAFNNSLCQPKGEGVSVQLEAIEGGKKDHQEADPLKPRIESRKDGVFWITPKVDQVSGEVINNESW LCSPLEVIGTGRDDKDQYLIIRWLPVGETLPTTAAIPLADIGEREGWRTLKAGGVNVTTKTALRATLADWFQRAGSHEIW RVAQATGWQCGAYIMPDGEVIGSPERPVLFNGRSAAAAGYTVKGTPEGWRDSVARLARGNPSMMAGIGAALAAPLIGLAG ADGFGIHFYEQSSAGKTTTANIASSLYGEPDALRLTWFGTALGIANEAAAHNDGLMPLDEVGQGADPDSVAKSAYTLFNG VGKLQGAKEGGNRDLKRWRTVALSTGEMDIETFIATAGRKVKAGQLVRLLNIPLEKAHQFHGTANGKAHADALKDAFQSH YGAAGRYWIKYLADHQQQAIAAVREAESRWRSLIPADYGEQVHRVAARFAVLEAALLLGRAVTGWDEQECRDAIQHNFNA WIKEFGTGNKEHQQIIEQTEAFLNAYGLSRFAPLPYDSQCMPIRDLAGYRDKGKHDSDAMVFYTFPAAFEDEIARGFNSK HFAKALAGAGMLTLPASGRGFQRKSPRIDGRQINVYVIHHLPEGEQVEE
Specific function: Required for autonomous replication in E.coli. Transferred into the recipient cell during bacterial conjugation. Catalyzes the synthesis of short oligoribonucleotide primers with CpA or pCpA at their 5'-termini on a single stranded template DNA [H]
COG id: COG5519
COG function: function code L; Superfamily II helicase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013610 - InterPro: IPR006171 [H]
Pfam domain/function: PF08401 DUF1738; PF01751 Toprim [H]
EC number: NA
Molecular weight: Translated: 100805; Mature: 100805
Theoretical pI: Translated: 6.46; Mature: 6.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRNIDLIREVTKSAANRWPDVLPMMGIDVPASPRAQVACPACGGRDRFRFDDNGRGSHF CCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCHH CNQCGAGDGLDLIQKVNRCDATEAARMVADVLGIDYRAADTGSGATSQSKAAIEAERQQR HHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH EQDRQQAEAAEHERKRQQFNRRWQSLTVDAVEREPEYLKAKGLTGVTFPTLKDGRLLVAL HHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHCCCHHHHHCCCCCCCCCCCCCCEEEEEE TDETGAVTAAQTITPAGEKRQVTDGTKRGSSHTLAGGPEHPQAVIIGEGLATTLTAHLIR ECCCCCEEEHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHCC PDALAVAAIDAGNLLHVAEAMHRRYPDAQIIIAGDNDHHEPGELDEHGRPRKNAGRISAE CCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHH KAAAAVAGWVSIPPTEYKADWDDYRQQNGIEAAVLAFNNSLCQPKGEGVSVQLEAIEGGK HHHHHHHCCCCCCCCCCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCCEEEEEEEECCCC KDHQEADPLKPRIESRKDGVFWITPKVDQVSGEVINNESWLCSPLEVIGTGRDDKDQYLI CCCCCCCCCCCCCCCCCCCEEEECCCHHHCCCCEECCCCCCCCCHHHHCCCCCCCCCEEE IRWLPVGETLPTTAAIPLADIGEREGWRTLKAGGVNVTTKTALRATLADWFQRAGSHEIW EEEEECCCCCCCCCCCCHHHCCCCCCCEEEECCCCCEEHHHHHHHHHHHHHHHCCCHHHE RVAQATGWQCGAYIMPDGEVIGSPERPVLFNGRSAAAAGYTVKGTPEGWRDSVARLARGN EHHHHCCCCCCEEECCCCCEECCCCCCEEECCCCCCCCCEEECCCCCHHHHHHHHHHCCC PSMMAGIGAALAAPLIGLAGADGFGIHFYEQSSAGKTTTANIASSLYGEPDALRLTWFGT CHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEEEHH ALGIANEAAAHNDGLMPLDEVGQGADPDSVAKSAYTLFNGVGKLQGAKEGGNRDLKRWRT HHHCCHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH VALSTGEMDIETFIATAGRKVKAGQLVRLLNIPLEKAHQFHGTANGKAHADALKDAFQSH HEEECCCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHH YGAAGRYWIKYLADHQQQAIAAVREAESRWRSLIPADYGEQVHRVAARFAVLEAALLLGR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH AVTGWDEQECRDAIQHNFNAWIKEFGTGNKEHQQIIEQTEAFLNAYGLSRFAPLPYDSQC HCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCC MPIRDLAGYRDKGKHDSDAMVFYTFPAAFEDEIARGFNSKHFAKALAGAGMLTLPASGRG CCHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHCCCEEEECCCCCC FQRKSPRIDGRQINVYVIHHLPEGEQVEE CCCCCCCCCCEEEEEEEEEECCCCCCCCC >Mature Secondary Structure MMRNIDLIREVTKSAANRWPDVLPMMGIDVPASPRAQVACPACGGRDRFRFDDNGRGSHF CCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCHH CNQCGAGDGLDLIQKVNRCDATEAARMVADVLGIDYRAADTGSGATSQSKAAIEAERQQR HHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH EQDRQQAEAAEHERKRQQFNRRWQSLTVDAVEREPEYLKAKGLTGVTFPTLKDGRLLVAL HHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHCCCHHHHHCCCCCCCCCCCCCCEEEEEE TDETGAVTAAQTITPAGEKRQVTDGTKRGSSHTLAGGPEHPQAVIIGEGLATTLTAHLIR ECCCCCEEEHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHCC PDALAVAAIDAGNLLHVAEAMHRRYPDAQIIIAGDNDHHEPGELDEHGRPRKNAGRISAE CCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHH KAAAAVAGWVSIPPTEYKADWDDYRQQNGIEAAVLAFNNSLCQPKGEGVSVQLEAIEGGK HHHHHHHCCCCCCCCCCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCCEEEEEEEECCCC KDHQEADPLKPRIESRKDGVFWITPKVDQVSGEVINNESWLCSPLEVIGTGRDDKDQYLI CCCCCCCCCCCCCCCCCCCEEEECCCHHHCCCCEECCCCCCCCCHHHHCCCCCCCCCEEE IRWLPVGETLPTTAAIPLADIGEREGWRTLKAGGVNVTTKTALRATLADWFQRAGSHEIW EEEEECCCCCCCCCCCCHHHCCCCCCCEEEECCCCCEEHHHHHHHHHHHHHHHCCCHHHE RVAQATGWQCGAYIMPDGEVIGSPERPVLFNGRSAAAAGYTVKGTPEGWRDSVARLARGN EHHHHCCCCCCEEECCCCCEECCCCCCEEECCCCCCCCCEEECCCCCHHHHHHHHHHCCC PSMMAGIGAALAAPLIGLAGADGFGIHFYEQSSAGKTTTANIASSLYGEPDALRLTWFGT CHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEEEHH ALGIANEAAAHNDGLMPLDEVGQGADPDSVAKSAYTLFNGVGKLQGAKEGGNRDLKRWRT HHHCCHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH VALSTGEMDIETFIATAGRKVKAGQLVRLLNIPLEKAHQFHGTANGKAHADALKDAFQSH HEEECCCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHH YGAAGRYWIKYLADHQQQAIAAVREAESRWRSLIPADYGEQVHRVAARFAVLEAALLLGR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH AVTGWDEQECRDAIQHNFNAWIKEFGTGNKEHQQIIEQTEAFLNAYGLSRFAPLPYDSQC HCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCC MPIRDLAGYRDKGKHDSDAMVFYTFPAAFEDEIARGFNSKHFAKALAGAGMLTLPASGRG CCHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHCCCEEEECCCCCC FQRKSPRIDGRQINVYVIHHLPEGEQVEE CCCCCCCCCCEEEEEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1818755 [H]