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The map label for this gene is ygeA [H]

Identifier: 157371646

GI number: 157371646

Start: 3770617

End: 3771309

Strand: Reverse

Name: ygeA [H]

Synonym: Spro_3409

Alternate gene names: 157371646

Gene position: 3771309-3770617 (Counterclockwise)

Preceding gene: 157371647

Following gene: 157371644

Centisome position: 69.21

GC content: 59.31

Gene sequence:

>693_bases
ATGAAAGTGTTGGGCCTGCTGGGCGGCATGAGTTGGGAATCAACCATACCTTATTACCGCATGATCAATGAACAGGTGAA
AGAGCGCCTCGGTGGCCTGCATTCGGCCAAAATTGTGCTCTACAGCGTCGATTTTCACGAGGTTGAACGCCTGCAGCATC
AGGGCGACTGGGACGGCGCGGGGCGTTTATTGGCTGCCGCTGCGGCCTCGCTGCGTGCCGCCGGTGCGCAGGCCATCGTC
ATTTGTACCAACACCATGCACAAGGTGGCGGATGCGGTTGAACAGGCCAGCGGCTTGCCGTTGATTCATATTGCCGACGC
CACGGCATTGCAGGTGCGCCAACAGGACATTCGCCGCGTCGGGCTACTCGGCACGCGTTTTACCATGGAGCAGGAGTTTT
ACCGTGGGCGCTTGCAGAAAAAATACGGCATCGAAGTGGTGACTCCGGTGGCGGCCGATCGCGACATTGTGCACCGTATT
ATTTATGAAGAGCTGTGCCTGGGGAAAATCCGTGATGCGTCGCGCGATGAGTACCGCCGCATCATCGGCGACCTGGAACA
GCAGGGGGCGCAAGGCATAATTTTTGGCTGCACCGAGATTGGCCTGCTGGTCAGCGCGCAGGATGCGTCAGTGCCGGTCT
TCGACACCACCGCCATCCATGCGCGCGCCGCAGCGGAATACGCGCTCGCTTAA

Upstream 100 bases:

>100_bases
GGCGCGCCAGCCGGTCAATTCCTCGGCTAAATAAGGCGTCGTCATCACTGCGATTCTCAGGTAATGTCGGATCATTGCAG
CAATGACGGAGGAGCAAACG

Downstream 100 bases:

>100_bases
TCGTCCTGCGCAGAGTGGCGCTTGCCCACCAGCATCAGCGGTTTGCCCGCCAGCACCAGCCAGGCGGGCAACATCACCAC
ACAGAGTATGGGCAGCAGAT

Product: aspartate racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MKVLGLLGGMSWESTIPYYRMINEQVKERLGGLHSAKIVLYSVDFHEVERLQHQGDWDGAGRLLAAAAASLRAAGAQAIV
ICTNTMHKVADAVEQASGLPLIHIADATALQVRQQDIRRVGLLGTRFTMEQEFYRGRLQKKYGIEVVTPVAADRDIVHRI
IYEELCLGKIRDASRDEYRRIIGDLEQQGAQGIIFGCTEIGLLVSAQDASVPVFDTTAIHARAAAEYALA

Sequences:

>Translated_230_residues
MKVLGLLGGMSWESTIPYYRMINEQVKERLGGLHSAKIVLYSVDFHEVERLQHQGDWDGAGRLLAAAAASLRAAGAQAIV
ICTNTMHKVADAVEQASGLPLIHIADATALQVRQQDIRRVGLLGTRFTMEQEFYRGRLQKKYGIEVVTPVAADRDIVHRI
IYEELCLGKIRDASRDEYRRIIGDLEQQGAQGIIFGCTEIGLLVSAQDASVPVFDTTAIHARAAAEYALA
>Mature_230_residues
MKVLGLLGGMSWESTIPYYRMINEQVKERLGGLHSAKIVLYSVDFHEVERLQHQGDWDGAGRLLAAAAASLRAAGAQAIV
ICTNTMHKVADAVEQASGLPLIHIADATALQVRQQDIRRVGLLGTRFTMEQEFYRGRLQKKYGIEVVTPVAADRDIVHRI
IYEELCLGKIRDASRDEYRRIIGDLEQQGAQGIIFGCTEIGLLVSAQDASVPVFDTTAIHARAAAEYALA

Specific function: Unknown

COG id: COG1794

COG function: function code M; Aspartate racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aspartate/glutamate racemases family [H]

Homologues:

Organism=Escherichia coli, GI1789205, Length=230, Percent_Identity=58.2608695652174, Blast_Score=288, Evalue=3e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015942
- InterPro:   IPR001920
- InterPro:   IPR018187
- InterPro:   IPR004380 [H]

Pfam domain/function: PF01177 Asp_Glu_race [H]

EC number: NA

Molecular weight: Translated: 25302; Mature: 25302

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS00923 ASP_GLU_RACEMASE_1 ; PS00924 ASP_GLU_RACEMASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLGLLGGMSWESTIPYYRMINEQVKERLGGLHSAKIVLYSVDFHEVERLQHQGDWDGA
CCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCCHH
GRLLAAAAASLRAAGAQAIVICTNTMHKVADAVEQASGLPLIHIADATALQVRQQDIRRV
HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH
GLLGTRFTMEQEFYRGRLQKKYGIEVVTPVAADRDIVHRIIYEELCLGKIRDASRDEYRR
HHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
IIGDLEQQGAQGIIFGCTEIGLLVSAQDASVPVFDTTAIHARAAAEYALA
HHHHHHHCCCCEEEEEHHHHCEEEECCCCCCCEEECHHHHHHHHHHHHCC
>Mature Secondary Structure
MKVLGLLGGMSWESTIPYYRMINEQVKERLGGLHSAKIVLYSVDFHEVERLQHQGDWDGA
CCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCCHH
GRLLAAAAASLRAAGAQAIVICTNTMHKVADAVEQASGLPLIHIADATALQVRQQDIRRV
HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH
GLLGTRFTMEQEFYRGRLQKKYGIEVVTPVAADRDIVHRIIYEELCLGKIRDASRDEYRR
HHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
IIGDLEQQGAQGIIFGCTEIGLLVSAQDASVPVFDTTAIHARAAAEYALA
HHHHHHHCCCCEEEEEHHHHCEEEECCCCCCCEEECHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6350602; 2836407; 9278503 [H]