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The map label for this gene is ccmH [H]

Identifier: 157371620

GI number: 157371620

Start: 3744350

End: 3745561

Strand: Reverse

Name: ccmH [H]

Synonym: Spro_3383

Alternate gene names: 157371620

Gene position: 3745561-3744350 (Counterclockwise)

Preceding gene: 157371621

Following gene: 157371619

Centisome position: 68.74

GC content: 56.52

Gene sequence:

>1212_bases
ATGGCTTTTTGGCTGATTATTATTGTATTGCTGGTCGGCGCTGCGGCGTTACTGGTGGTGCCGGCGATGCGCCAAAGCGA
CAAAAGCACTGCCGCTAGCCGCGATACGCTGAATAAAGCATTTTATCAGGATCGCCTGCACGAACTGGAGCAGGACGAAG
ATCAGGGCGTGGTTACCGAGCGTCCGGAGATGGTGAAGGAACTGCAGCAAAATCTGCTCAATGATATCCCCGGTCAGCAG
GACGTGCAGGCGAAGCCGATCAACCGTTGGGCGCTGGTGCCCGGCGTAGCGTTACTGGTGGTGGTCACCCTGGGCTTCTA
TCTGAAAACCGGTGGGTTGGCGCAGGTGCTGGACTGGCAGCAGGTGGAAGCTCAAATGCCGGAACTGCGCGCTCGGGTTA
GCAATGAGCGCGCCCAACCGCTGAGCATGGAAGAGATTGCTCGTCTCGGCCTGGGGCTGCGTACTGCGTTGCAACAGGAC
GACCGCAATATCAACGACTGGATGATGCTGGGCCGGGTCGGCATGGCATTGAATAACGCCACCACCGCGACTCAGGCATT
CGCCCATGCTTATCAGCTCGATCCGAATAGTCTGGAAGTGCGCCTCGGTTATGCGGAAGTCTTGACGCGCTCCAACGATC
CAGAGGATAACAAGCAGGCCACCCAGATGCTGCGCAAGATGATCGCCGAAGATCATACCAATCTGCGCGTGTTGAGCCTG
TTGGCGTTTAATTCCTTTGAGCAGGGCGATTTCAAGCAGGCTATTGGTGCCTGGCAGGTCATGCTGAAACTGTTGCCGGC
CAATGATCAACGCGCCGAAGTGATAAAGCGCAGTATTGCACAAGCAAAAACACAGGCAGGCGGAGAAACTGTTAAACTTG
GCGTTAACGTGACGTTATCGCCGCAGGCGACTAATGCTTTGCCGCCGCAGGGGACGCTGGTAATCTCGGTGACCGATGGT
GCCAATCCGGTGCCGGTGGCGGTAAAACAACTGCCTTTAAGCCGTTTCCCCCTGTCATTCTCTTTGGATGACAGCAATGC
CATGATGCCTGAGCGGCTGCTTTCGGCCCAGCATCAGGTCAAGGTGCGGGTGCGGATTTCTCAGGACGGTCTGGCCACGC
CACAGGCGGGTGACTGGTTCGGTGAGAGTGCGCTGCAGAATTTCAGCGGTAAAGAGCAGATTGACGTTCAGATAAACAAA
CAGGTCCCCTGA

Upstream 100 bases:

>100_bases
GTCGCCGCGCCGGTGCTGCTAACGCTAACGATGAATTCTCCGAGCAGGAGCAACAGCGTTTGGCAGCGCTGCTGAAAGAG
ACTGACAGGAAGAAACCCTA

Downstream 100 bases:

>100_bases
ATAAAAAGACCGAACGTGTTTTCATGGAGAAGAATATGAACTTTCGCCTGACTGGGCTGGCTTTCACAACGGTGTTATTG
GTGGGCTGTGCCAGCACGCC

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MAFWLIIIVLLVGAAALLVVPAMRQSDKSTAASRDTLNKAFYQDRLHELEQDEDQGVVTERPEMVKELQQNLLNDIPGQQ
DVQAKPINRWALVPGVALLVVVTLGFYLKTGGLAQVLDWQQVEAQMPELRARVSNERAQPLSMEEIARLGLGLRTALQQD
DRNINDWMMLGRVGMALNNATTATQAFAHAYQLDPNSLEVRLGYAEVLTRSNDPEDNKQATQMLRKMIAEDHTNLRVLSL
LAFNSFEQGDFKQAIGAWQVMLKLLPANDQRAEVIKRSIAQAKTQAGGETVKLGVNVTLSPQATNALPPQGTLVISVTDG
ANPVPVAVKQLPLSRFPLSFSLDDSNAMMPERLLSAQHQVKVRVRISQDGLATPQAGDWFGESALQNFSGKEQIDVQINK
QVP

Sequences:

>Translated_403_residues
MAFWLIIIVLLVGAAALLVVPAMRQSDKSTAASRDTLNKAFYQDRLHELEQDEDQGVVTERPEMVKELQQNLLNDIPGQQ
DVQAKPINRWALVPGVALLVVVTLGFYLKTGGLAQVLDWQQVEAQMPELRARVSNERAQPLSMEEIARLGLGLRTALQQD
DRNINDWMMLGRVGMALNNATTATQAFAHAYQLDPNSLEVRLGYAEVLTRSNDPEDNKQATQMLRKMIAEDHTNLRVLSL
LAFNSFEQGDFKQAIGAWQVMLKLLPANDQRAEVIKRSIAQAKTQAGGETVKLGVNVTLSPQATNALPPQGTLVISVTDG
ANPVPVAVKQLPLSRFPLSFSLDDSNAMMPERLLSAQHQVKVRVRISQDGLATPQAGDWFGESALQNFSGKEQIDVQINK
QVP
>Mature_402_residues
AFWLIIIVLLVGAAALLVVPAMRQSDKSTAASRDTLNKAFYQDRLHELEQDEDQGVVTERPEMVKELQQNLLNDIPGQQD
VQAKPINRWALVPGVALLVVVTLGFYLKTGGLAQVLDWQQVEAQMPELRARVSNERAQPLSMEEIARLGLGLRTALQQDD
RNINDWMMLGRVGMALNNATTATQAFAHAYQLDPNSLEVRLGYAEVLTRSNDPEDNKQATQMLRKMIAEDHTNLRVLSLL
AFNSFEQGDFKQAIGAWQVMLKLLPANDQRAEVIKRSIAQAKTQAGGETVKLGVNVTLSPQATNALPPQGTLVISVTDGA
NPVPVAVKQLPLSRFPLSFSLDDSNAMMPERLLSAQHQVKVRVRISQDGLATPQAGDWFGESALQNFSGKEQIDVQINKQ
VP

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=207, Percent_Identity=50.2415458937198, Blast_Score=211, Evalue=8e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 44443; Mature: 44311

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFWLIIIVLLVGAAALLVVPAMRQSDKSTAASRDTLNKAFYQDRLHELEQDEDQGVVTE
CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
RPEMVKELQQNLLNDIPGQQDVQAKPINRWALVPGVALLVVVTLGFYLKTGGLAQVLDWQ
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
QVEAQMPELRARVSNERAQPLSMEEIARLGLGLRTALQQDDRNINDWMMLGRVGMALNNA
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
TTATQAFAHAYQLDPNSLEVRLGYAEVLTRSNDPEDNKQATQMLRKMIAEDHTNLRVLSL
HHHHHHHHHHHCCCCCCEEEEECHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH
LAFNSFEQGDFKQAIGAWQVMLKLLPANDQRAEVIKRSIAQAKTQAGGETVKLGVNVTLS
HHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC
PQATNALPPQGTLVISVTDGANPVPVAVKQLPLSRFPLSFSLDDSNAMMPERLLSAQHQV
CCCCCCCCCCCEEEEEECCCCCCCCHHHHHCCHHHCCEEEEECCCCCCCHHHHHCCCCEE
KVRVRISQDGLATPQAGDWFGESALQNFSGKEQIDVQINKQVP
EEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCC
>Mature Secondary Structure 
AFWLIIIVLLVGAAALLVVPAMRQSDKSTAASRDTLNKAFYQDRLHELEQDEDQGVVTE
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
RPEMVKELQQNLLNDIPGQQDVQAKPINRWALVPGVALLVVVTLGFYLKTGGLAQVLDWQ
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
QVEAQMPELRARVSNERAQPLSMEEIARLGLGLRTALQQDDRNINDWMMLGRVGMALNNA
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
TTATQAFAHAYQLDPNSLEVRLGYAEVLTRSNDPEDNKQATQMLRKMIAEDHTNLRVLSL
HHHHHHHHHHHCCCCCCEEEEECHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH
LAFNSFEQGDFKQAIGAWQVMLKLLPANDQRAEVIKRSIAQAKTQAGGETVKLGVNVTLS
HHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC
PQATNALPPQGTLVISVTDGANPVPVAVKQLPLSRFPLSFSLDDSNAMMPERLLSAQHQV
CCCCCCCCCCCEEEEEECCCCCCCCHHHHHCCHHHCCEEEEECCCCCCCHHHHHCCCCEE
KVRVRISQDGLATPQAGDWFGESALQNFSGKEQIDVQINKQVP
EEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]