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The map label for this gene is ybiR [H]

Identifier: 157371597

GI number: 157371597

Start: 3718200

End: 3719312

Strand: Reverse

Name: ybiR [H]

Synonym: Spro_3360

Alternate gene names: 157371597

Gene position: 3719312-3718200 (Counterclockwise)

Preceding gene: 157371599

Following gene: 157371595

Centisome position: 68.26

GC content: 54.63

Gene sequence:

>1113_bases
ATGAGTTCAAATTCCCTGGTCCGGCTGTTCCAGCCGTTCCTGAAAGATCGTTTTTTACATATTCTGCTGGTGGCCGGCGT
GTTGATGCTGGCTATTAATCCGCAACAACTGCCTGCGCTCAGCGGTTTTATCGACTGGCGCACCATTATTACCCTGCTGG
GATTGATGTTGCTGACCAAGGGGGTTGAGGTCAGCGGCTATTTTGACTTTATTGGCCGCAAGATAGTCAATACGTTGCAT
AGCGAACGGCGGCTGGCGCTGTTTCTGGTGTTTTCAGCCGCGCTGTTGTCGTCATTCCTGACCAACGACGTGGCGCTGTT
TATCGTTATTCCGCTGACCATCACGCTGAAAAAACTGTCTTCGCTGCCGATTAGCCGGCTGATTATCTTTCAGGCGCTGG
CGGTCAATGCCGGTTCGCTGCTGACGCCGATTGGTAACCCGCAGAATATTTTGCTGTGGAGTAAATCCTCGCTGTCGTTT
CTGGCCTTTATTGTCCAGATGGCGCCCTTTGGCGCAGCGATGCTGGCCAGCCTGCTGCTGCTAACCTGGTTCAGTTTCCC
GGCGCGGGAGATCGTTAAAGCTCCACATACCGAAGGCTATCCTTACCAGCGACGTCTGTTGCTGAGCTGCGTGGCACTGT
ACGTGATTTTTCTGCTGTGTCTGGATATCGGCCTGCCGCTGTACGGCCTGTTGGCTGTGTTCGCCGGTTTTTTACTGTTG
GCACGCCGGGTGTTACTGCAGATTGACTGGAGCCTGATTTTTGTCTTTATCGCCATGTTTATCGATGTGGGGCTGTTCAC
CCGCCTTGAGGCGGTTCAGCCCTGGTTTGCTGACATCGCCAGGCTGGGCGAGGGCGGTATTTATGCCCTGGGGATCGGCC
TGTCGCAGGTGATCAGCAACGTGCCGGCGACCATTTTGCTGCTTAACTACGTGCCTTCCAGCCAACTGTTGGCCTATGCG
GTCAACGCCGGTGGCTTTGGCTTGGCGATCGGTTCACTGGCTAACCTGATTGCACTGCGGATGGCGGGTGAGCGAAAAAT
CTGGCTGAAATTCCATTACTACTCGCTGCCACTGCTGGCATGGAGTGGTTTGCTCGGCTGGTTGCTGGCTTAA

Upstream 100 bases:

>100_bases
GAAAAGCAGATAAAGGTAAAAGAGCATTTTACTGGCGTTGCCGTCGCGCTTGGGCTAACTTCTGGCTCCTGATCCCGGTT
GTTTTTTAGAAGCGCTCAAC

Downstream 100 bases:

>100_bases
GAGCGATATTTCTACTTGAAATACCGCTCTCCTCTGGCGCGTCTGTTAGCCGCGTGCGGCCAGCAAACAGATGCTGCGGG
TGACCTGATAGGACTTCACA

Product: citrate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 369

Protein sequence:

>370_residues
MSSNSLVRLFQPFLKDRFLHILLVAGVLMLAINPQQLPALSGFIDWRTIITLLGLMLLTKGVEVSGYFDFIGRKIVNTLH
SERRLALFLVFSAALLSSFLTNDVALFIVIPLTITLKKLSSLPISRLIIFQALAVNAGSLLTPIGNPQNILLWSKSSLSF
LAFIVQMAPFGAAMLASLLLLTWFSFPAREIVKAPHTEGYPYQRRLLLSCVALYVIFLLCLDIGLPLYGLLAVFAGFLLL
ARRVLLQIDWSLIFVFIAMFIDVGLFTRLEAVQPWFADIARLGEGGIYALGIGLSQVISNVPATILLLNYVPSSQLLAYA
VNAGGFGLAIGSLANLIALRMAGERKIWLKFHYYSLPLLAWSGLLGWLLA

Sequences:

>Translated_370_residues
MSSNSLVRLFQPFLKDRFLHILLVAGVLMLAINPQQLPALSGFIDWRTIITLLGLMLLTKGVEVSGYFDFIGRKIVNTLH
SERRLALFLVFSAALLSSFLTNDVALFIVIPLTITLKKLSSLPISRLIIFQALAVNAGSLLTPIGNPQNILLWSKSSLSF
LAFIVQMAPFGAAMLASLLLLTWFSFPAREIVKAPHTEGYPYQRRLLLSCVALYVIFLLCLDIGLPLYGLLAVFAGFLLL
ARRVLLQIDWSLIFVFIAMFIDVGLFTRLEAVQPWFADIARLGEGGIYALGIGLSQVISNVPATILLLNYVPSSQLLAYA
VNAGGFGLAIGSLANLIALRMAGERKIWLKFHYYSLPLLAWSGLLGWLLA
>Mature_369_residues
SSNSLVRLFQPFLKDRFLHILLVAGVLMLAINPQQLPALSGFIDWRTIITLLGLMLLTKGVEVSGYFDFIGRKIVNTLHS
ERRLALFLVFSAALLSSFLTNDVALFIVIPLTITLKKLSSLPISRLIIFQALAVNAGSLLTPIGNPQNILLWSKSSLSFL
AFIVQMAPFGAAMLASLLLLTWFSFPAREIVKAPHTEGYPYQRRLLLSCVALYVIFLLCLDIGLPLYGLLAVFAGFLLLA
RRVLLQIDWSLIFVFIAMFIDVGLFTRLEAVQPWFADIARLGEGGIYALGIGLSQVISNVPATILLLNYVPSSQLLAYAV
NAGGFGLAIGSLANLIALRMAGERKIWLKFHYYSLPLLAWSGLLGWLLA

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Escherichia coli, GI1787039, Length=365, Percent_Identity=58.3561643835616, Blast_Score=395, Evalue=1e-111,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 40757; Mature: 40625

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNSLVRLFQPFLKDRFLHILLVAGVLMLAINPQQLPALSGFIDWRTIITLLGLMLLTK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
GVEVSGYFDFIGRKIVNTLHSERRLALFLVFSAALLSSFLTNDVALFIVIPLTITLKKLS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
SLPISRLIIFQALAVNAGSLLTPIGNPQNILLWSKSSLSFLAFIVQMAPFGAAMLASLLL
CCCHHHHHHHHHHHHCCCCEECCCCCCCEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHH
LTWFSFPAREIVKAPHTEGYPYQRRLLLSCVALYVIFLLCLDIGLPLYGLLAVFAGFLLL
HHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
ARRVLLQIDWSLIFVFIAMFIDVGLFTRLEAVQPWFADIARLGEGGIYALGIGLSQVISN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCEEEECCCHHHHHHH
VPATILLLNYVPSSQLLAYAVNAGGFGLAIGSLANLIALRMAGERKIWLKFHYYSLPLLA
CCHHHHHEECCCCHHHHHEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEHHHHHHH
WSGLLGWLLA
HHHHHHHHCC
>Mature Secondary Structure 
SSNSLVRLFQPFLKDRFLHILLVAGVLMLAINPQQLPALSGFIDWRTIITLLGLMLLTK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
GVEVSGYFDFIGRKIVNTLHSERRLALFLVFSAALLSSFLTNDVALFIVIPLTITLKKLS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
SLPISRLIIFQALAVNAGSLLTPIGNPQNILLWSKSSLSFLAFIVQMAPFGAAMLASLLL
CCCHHHHHHHHHHHHCCCCEECCCCCCCEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHH
LTWFSFPAREIVKAPHTEGYPYQRRLLLSCVALYVIFLLCLDIGLPLYGLLAVFAGFLLL
HHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
ARRVLLQIDWSLIFVFIAMFIDVGLFTRLEAVQPWFADIARLGEGGIYALGIGLSQVISN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCEEEECCCHHHHHHH
VPATILLLNYVPSSQLLAYAVNAGGFGLAIGSLANLIALRMAGERKIWLKFHYYSLPLLA
CCHHHHHEECCCCHHHHHEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEHHHHHHH
WSGLLGWLLA
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]