| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is ucpA [C]
Identifier: 157371422
GI number: 157371422
Start: 3504438
End: 3505220
Strand: Reverse
Name: ucpA [C]
Synonym: Spro_3183
Alternate gene names: 157371422
Gene position: 3505220-3504438 (Counterclockwise)
Preceding gene: 157371424
Following gene: 157371421
Centisome position: 64.33
GC content: 53.13
Gene sequence:
>783_bases ATGACCAAACCAACAGTTCTGATTACAGGCGCTTCCACAGGCATTGGCGCCGTATACGCTGAACGGTTCGCACGCCGGGG CCATGACCTGGTTCTGGTCGCCCGCGACAAGACAAAACTTGATAGCCTTGCCGAGCAGTTGAGACAAGAAAGCGGTATTG CCGTCGACGTTCTGCCTGCTGACCTCACGCAAGCGGATGATTTAGCGGCTGTTGAAGCTCGTTTACGTGATGACACGCGG ATAGGCATTCTTATCAATAACGCGGGTATCGCGCAGTCGGGCAGCTTTATAGAGCAGACGTCTGATTCAATTGAGCAGCT TATCGCGCTTAATGTGACGGCTTTAACCCGACTGGCTAATGCTGTGACGCCACGGTTTGTGCTGGCTGGCGAGGGCGCTA TCGTCAACATCAGTTCCGTCGTCGGGCTCGCCCCTGAATTTGCAATGTCGGTTTATGGCGCAACCAAAGCCTTTGTTCTG TTCCTGTCTCAGGGCATGAATATTGAGCTGTCGCAGAAGGGGGTTTATGTTCAGGCGGTGCTCCCTGCCGGGACTTATAC GGAAATTTGGCAACGTGCAGGTATCGACACCAACACTTTGCCCCAAATGATGGAAGTGGGCGAATTGGTTGATGCAGCCC TGGTTGGTTTTGATCGGCGTGAACTCGTTACCATCCCACCTTTGCAGAATGCCACACGTTGGGACAACCTCGATGCTGCG CGTCAGACCCTGCTATCGGATATCAAACAAGATGAAGCCGCAGAGCGATATAAAACCCTTTAG
Upstream 100 bases:
>100_bases TCATCATCATTGCGATGGTCCCGTTAGCCACCACTATCAGGGTTCTACAGACATCGCAGTTTGCGAATTTTATTTACTCA TTGATAAAGAAGGGTATTTC
Downstream 100 bases:
>100_bases ACAATAAAGGGTCCTGCTCAGAACAATCGTTCAGCTGCCTGCACGGCAGGGGAAAAATAAATGAATAATAAGACGATGAA AGCCTTCACGTTTAAGCGTT
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MTKPTVLITGASTGIGAVYAERFARRGHDLVLVARDKTKLDSLAEQLRQESGIAVDVLPADLTQADDLAAVEARLRDDTR IGILINNAGIAQSGSFIEQTSDSIEQLIALNVTALTRLANAVTPRFVLAGEGAIVNISSVVGLAPEFAMSVYGATKAFVL FLSQGMNIELSQKGVYVQAVLPAGTYTEIWQRAGIDTNTLPQMMEVGELVDAALVGFDRRELVTIPPLQNATRWDNLDAA RQTLLSDIKQDEAAERYKTL
Sequences:
>Translated_260_residues MTKPTVLITGASTGIGAVYAERFARRGHDLVLVARDKTKLDSLAEQLRQESGIAVDVLPADLTQADDLAAVEARLRDDTR IGILINNAGIAQSGSFIEQTSDSIEQLIALNVTALTRLANAVTPRFVLAGEGAIVNISSVVGLAPEFAMSVYGATKAFVL FLSQGMNIELSQKGVYVQAVLPAGTYTEIWQRAGIDTNTLPQMMEVGELVDAALVGFDRRELVTIPPLQNATRWDNLDAA RQTLLSDIKQDEAAERYKTL >Mature_259_residues TKPTVLITGASTGIGAVYAERFARRGHDLVLVARDKTKLDSLAEQLRQESGIAVDVLPADLTQADDLAAVEARLRDDTRI GILINNAGIAQSGSFIEQTSDSIEQLIALNVTALTRLANAVTPRFVLAGEGAIVNISSVVGLAPEFAMSVYGATKAFVLF LSQGMNIELSQKGVYVQAVLPAGTYTEIWQRAGIDTNTLPQMMEVGELVDAALVGFDRRELVTIPPLQNATRWDNLDAAR QTLLSDIKQDEAAERYKTL
Specific function: Unknown
COG id: COG0300
COG function: function code R; Short-chain dehydrogenases of various substrate specificities
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7705855, Length=180, Percent_Identity=33.8888888888889, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI4557649, Length=198, Percent_Identity=31.3131313131313, Blast_Score=101, Evalue=7e-22, Organism=Homo sapiens, GI226371731, Length=178, Percent_Identity=29.2134831460674, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI7706318, Length=195, Percent_Identity=30.2564102564103, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI225579078, Length=211, Percent_Identity=27.0142180094787, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI40807363, Length=217, Percent_Identity=27.1889400921659, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI32483357, Length=222, Percent_Identity=27.4774774774775, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI7705925, Length=229, Percent_Identity=28.82096069869, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI109715829, Length=184, Percent_Identity=29.8913043478261, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI20149619, Length=190, Percent_Identity=28.4210526315789, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI5031737, Length=224, Percent_Identity=25, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI126723191, Length=184, Percent_Identity=27.1739130434783, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI33667109, Length=179, Percent_Identity=26.2569832402235, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI59889578, Length=171, Percent_Identity=29.8245614035088, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI4504503, Length=190, Percent_Identity=28.4210526315789, Blast_Score=64, Evalue=1e-10, Organism=Escherichia coli, GI87082100, Length=193, Percent_Identity=32.1243523316062, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI1790717, Length=186, Percent_Identity=30.6451612903226, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI1787820, Length=184, Percent_Identity=33.1521739130435, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787335, Length=196, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI2367175, Length=196, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1786812, Length=190, Percent_Identity=30, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1786701, Length=189, Percent_Identity=29.6296296296296, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71994604, Length=205, Percent_Identity=31.7073170731707, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI71994600, Length=206, Percent_Identity=31.5533980582524, Blast_Score=94, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17559552, Length=190, Percent_Identity=32.1052631578947, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17557668, Length=190, Percent_Identity=32.6315789473684, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI25152911, Length=186, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI212646214, Length=184, Percent_Identity=30.4347826086957, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17560176, Length=183, Percent_Identity=31.6939890710383, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17562904, Length=194, Percent_Identity=30.4123711340206, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17551412, Length=194, Percent_Identity=31.4432989690722, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17561402, Length=187, Percent_Identity=26.7379679144385, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI115534694, Length=228, Percent_Identity=28.9473684210526, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI193204405, Length=215, Percent_Identity=29.3023255813954, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17562908, Length=217, Percent_Identity=29.4930875576037, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17560676, Length=192, Percent_Identity=25, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17508895, Length=201, Percent_Identity=26.865671641791, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17532725, Length=185, Percent_Identity=28.1081081081081, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17555706, Length=179, Percent_Identity=25.1396648044693, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI25147288, Length=182, Percent_Identity=27.4725274725275, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17560150, Length=200, Percent_Identity=28.5, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17563726, Length=199, Percent_Identity=28.1407035175879, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17562910, Length=209, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17538480, Length=227, Percent_Identity=28.6343612334802, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6319635, Length=187, Percent_Identity=28.8770053475936, Blast_Score=79, Evalue=7e-16, Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=34.3589743589744, Blast_Score=76, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6322861, Length=205, Percent_Identity=26.3414634146341, Blast_Score=73, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6322067, Length=205, Percent_Identity=26.3414634146341, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI28571526, Length=209, Percent_Identity=37.799043062201, Blast_Score=108, Evalue=3e-24, Organism=Drosophila melanogaster, GI24584748, Length=178, Percent_Identity=31.4606741573034, Blast_Score=106, Evalue=1e-23, Organism=Drosophila melanogaster, GI161076933, Length=178, Percent_Identity=31.4606741573034, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI24640442, Length=185, Percent_Identity=31.3513513513514, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI21357041, Length=209, Percent_Identity=34.9282296650718, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI24584744, Length=185, Percent_Identity=29.7297297297297, Blast_Score=98, Evalue=6e-21, Organism=Drosophila melanogaster, GI28574402, Length=185, Percent_Identity=29.7297297297297, Blast_Score=98, Evalue=6e-21, Organism=Drosophila melanogaster, GI23397609, Length=195, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=9e-21, Organism=Drosophila melanogaster, GI24644339, Length=202, Percent_Identity=33.1683168316832, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI24584752, Length=208, Percent_Identity=29.8076923076923, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI24651139, Length=194, Percent_Identity=29.8969072164948, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI21358495, Length=191, Percent_Identity=29.8429319371728, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI21356301, Length=187, Percent_Identity=28.8770053475936, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI281364892, Length=169, Percent_Identity=30.1775147928994, Blast_Score=67, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 28014; Mature: 27883
Theoretical pI: Translated: 4.48; Mature: 4.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKPTVLITGASTGIGAVYAERFARRGHDLVLVARDKTKLDSLAEQLRQESGIAVDVLPA CCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECC DLTQADDLAAVEARLRDDTRIGILINNAGIAQSGSFIEQTSDSIEQLIALNVTALTRLAN CCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH AVTPRFVLAGEGAIVNISSVVGLAPEFAMSVYGATKAFVLFLSQGMNIELSQKGVYVQAV HCCCCEEEECCCCEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEE LPAGTYTEIWQRAGIDTNTLPQMMEVGELVDAALVGFDRRELVTIPPLQNATRWDNLDAA ECCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHH RQTLLSDIKQDEAAERYKTL HHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TKPTVLITGASTGIGAVYAERFARRGHDLVLVARDKTKLDSLAEQLRQESGIAVDVLPA CCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECC DLTQADDLAAVEARLRDDTRIGILINNAGIAQSGSFIEQTSDSIEQLIALNVTALTRLAN CCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH AVTPRFVLAGEGAIVNISSVVGLAPEFAMSVYGATKAFVLFLSQGMNIELSQKGVYVQAV HCCCCEEEECCCCEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEE LPAGTYTEIWQRAGIDTNTLPQMMEVGELVDAALVGFDRRELVTIPPLQNATRWDNLDAA ECCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHH RQTLLSDIKQDEAAERYKTL HHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA