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The map label for this gene is yecS [H]

Identifier: 157371175

GI number: 157371175

Start: 3235884

End: 3236546

Strand: Reverse

Name: yecS [H]

Synonym: Spro_2935

Alternate gene names: 157371175

Gene position: 3236546-3235884 (Counterclockwise)

Preceding gene: 157371176

Following gene: 157371174

Centisome position: 59.4

GC content: 58.22

Gene sequence:

>663_bases
ATGCACGAAAGTATTCAACTGGCGCTGGATTCAGCGCCATTTTTATTGAAGGGCGCGATACTCACTCTCCAGCTCAGTCT
GGGGGGCATGGCGCTCGGTTTAATGCTCGGTTTTCTGCTGGCGCTGATGCGCCTTTCGCCGTTATGGCCGCTGTCCTGGC
TGTCGCGTTTCTACGTGTCGCTGTTCCGTGGCACGCCGCTGATTGCCCAGCTGTTCATGATTTACTATGGTCTGCCGCAG
TTCGGCATCGAGTTTGATCCCTTCCCGGCGGCGCTGATTGGTCTGTCGCTCAATACCGCGGCTTATACCTCAGAAACCCT
GCGTGCGGCGATTTCGTCGATCGAAAAAGGGCAGTGGGAAGCCGCGGCCAGCATAGGTATGACCCGCTGGCAGACGCTGC
GCCGGGTGATCTTGCCGCAGGCGGCGCGTACCGCATTGCCTCCGTTGGGTAACAGCTTTATCGGCCTGGTGAAAGACACC
TCGCTGGCGGCGACCATTCAGGTACCGGAGCTGTTCCGTCAGGCGCAGTTGATTACCTCACGCACGCTGGAAGTGTTCAC
CATGTATCTGGCGGCCTCGCTGATTTACTGGGTGATGGCGACTCTGCTTTCTGCGCTGCAAAATCGTCTGGAAGCCCACG
TCAACCGCCAGGATCAGGAGTAA

Upstream 100 bases:

>100_bases
AACTGCTGGCCGCGATTAACCAGGCGATTGCCGACATGCAAAAAGACGGCACGCTGGCGAAGATCTCTGACAAATGGTTT
GGCGCGGACGTAACTAAATA

Downstream 100 bases:

>100_bases
CCCATGAGTGCCATCGAAGTAAAACAGCTGATCAAGCAGTTCAAAGGTCAAACGGTGCTGCATGGGATTGATCTGGAGGT
CAGTGCGGGCGAAGTGGTAG

Product: polar amino acid ABC transporter inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MHESIQLALDSAPFLLKGAILTLQLSLGGMALGLMLGFLLALMRLSPLWPLSWLSRFYVSLFRGTPLIAQLFMIYYGLPQ
FGIEFDPFPAALIGLSLNTAAYTSETLRAAISSIEKGQWEAAASIGMTRWQTLRRVILPQAARTALPPLGNSFIGLVKDT
SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATLLSALQNRLEAHVNRQDQE

Sequences:

>Translated_220_residues
MHESIQLALDSAPFLLKGAILTLQLSLGGMALGLMLGFLLALMRLSPLWPLSWLSRFYVSLFRGTPLIAQLFMIYYGLPQ
FGIEFDPFPAALIGLSLNTAAYTSETLRAAISSIEKGQWEAAASIGMTRWQTLRRVILPQAARTALPPLGNSFIGLVKDT
SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATLLSALQNRLEAHVNRQDQE
>Mature_220_residues
MHESIQLALDSAPFLLKGAILTLQLSLGGMALGLMLGFLLALMRLSPLWPLSWLSRFYVSLFRGTPLIAQLFMIYYGLPQ
FGIEFDPFPAALIGLSLNTAAYTSETLRAAISSIEKGQWEAAASIGMTRWQTLRRVILPQAARTALPPLGNSFIGLVKDT
SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATLLSALQNRLEAHVNRQDQE

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=220, Percent_Identity=81.8181818181818, Blast_Score=369, Evalue=1e-104,
Organism=Escherichia coli, GI1787030, Length=201, Percent_Identity=39.3034825870647, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1786873, Length=211, Percent_Identity=36.4928909952607, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787086, Length=209, Percent_Identity=36.3636363636364, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787087, Length=230, Percent_Identity=33.0434782608696, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI87082239, Length=204, Percent_Identity=38.7254901960784, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1788646, Length=219, Percent_Identity=31.0502283105023, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1788645, Length=228, Percent_Identity=32.0175438596491, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1786874, Length=227, Percent_Identity=30.8370044052863, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI48994930, Length=183, Percent_Identity=36.0655737704918, Blast_Score=81, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24346; Mature: 24346

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHESIQLALDSAPFLLKGAILTLQLSLGGMALGLMLGFLLALMRLSPLWPLSWLSRFYVS
CCCCCEEHCCCCCHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LFRGTPLIAQLFMIYYGLPQFGIEFDPFPAALIGLSLNTAAYTSETLRAAISSIEKGQWE
HHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHH
AAASIGMTRWQTLRRVILPQAARTALPPLGNSFIGLVKDTSLAATIQVPELFRQAQLITS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHEEEEHHHHHHHHHHHHH
RTLEVFTMYLAASLIYWVMATLLSALQNRLEAHVNRQDQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MHESIQLALDSAPFLLKGAILTLQLSLGGMALGLMLGFLLALMRLSPLWPLSWLSRFYVS
CCCCCEEHCCCCCHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LFRGTPLIAQLFMIYYGLPQFGIEFDPFPAALIGLSLNTAAYTSETLRAAISSIEKGQWE
HHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHH
AAASIGMTRWQTLRRVILPQAARTALPPLGNSFIGLVKDTSLAATIQVPELFRQAQLITS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHEEEEHHHHHHHHHHHHH
RTLEVFTMYLAASLIYWVMATLLSALQNRLEAHVNRQDQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]