| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is nikE [H]
Identifier: 157370980
GI number: 157370980
Start: 3018335
End: 3019117
Strand: Direct
Name: nikE [H]
Synonym: Spro_2740
Alternate gene names: 157370980
Gene position: 3018335-3019117 (Clockwise)
Preceding gene: 157370979
Following gene: 157370981
Centisome position: 55.39
GC content: 59.13
Gene sequence:
>783_bases ATGTCAATCAGTGGAACGCTGCCCTTTATCAGCCTGCAGCAAGTCTGTCGGCGATATTCATCACAGTCTGACGGACTGAA ACCCACCGACCTGAATCTTTATCCGGAGGAACGCGTCGGGCTGGTAGGCTGCTCCGGCGCAGGGAAATCGACGCTGCTCA GGCTGTTGCTGGCATTGGAAACTGCTGATGCCGGCCATATCCTGTGCCAGGGTAATGCCGTCCACCCCACCGCTGTGAAC CCATTGCGCTGGTATCGACGTTTGGTGCAATACGTCCCTCAGGATGCCCATGCCTCACTTAACCCGCGCCACACGGTGGC CGAGTTGATTATTGAACCTCTGCGTCAGCTGGCACCCAGGCAGGATTTGAGCATTGCCGCTGAGCGGGCCTTGCGGCAGG TCGAATTGGATGATCACCTGATACACGCCCGCCCCGGCCAGCTCTCCGGTGGGCAGGCACAACGGGTGGCGCTGGCGCGT GCTATCGCGCTACAACCCCGATTTTTAATCGCCGATGAACCGGTCAGCGGTCTGGATCTGCCACTGCGTCAGCAGATCAT CGGCCTGCTGGACAAGATTACTCGTCAACAAAATATGGGCATGCTGCTTGTCTCCCATGATATTTCACTGGTCGCCGCCC TATGCCAACGAACGCTGGTGATGGCCTGCGGCGTCATCGTGGAAGATCGTCCAACCGATGAACTGCTGCGCAGCCCGCGA CATGCCGCCACCTGCGATCTGCTGGCCGCCATTCCCTCGTTACCCGCCCTTTATCAGCCCTGA
Upstream 100 bases:
>100_bases CCTGCTCACCCCTATACCCGGCAGTTGGTTGCCACAGCGCAGCGCCCAACCTTCAAGCGGACATCGCCGTTGAGTCTGGT TGGTTAACGGAGTGAACGGC
Downstream 100 bases:
>100_bases CATTCTGAGGACTTTTTCATGTTGAACCCACGCTTTATTGGCCCCACCGGCTGCCTGCTCGCCGGCAGCTTGCTGCTTGG CGGCTGTTTTGACCCTGCCG
Product: ABC transporter-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MSISGTLPFISLQQVCRRYSSQSDGLKPTDLNLYPEERVGLVGCSGAGKSTLLRLLLALETADAGHILCQGNAVHPTAVN PLRWYRRLVQYVPQDAHASLNPRHTVAELIIEPLRQLAPRQDLSIAAERALRQVELDDHLIHARPGQLSGGQAQRVALAR AIALQPRFLIADEPVSGLDLPLRQQIIGLLDKITRQQNMGMLLVSHDISLVAALCQRTLVMACGVIVEDRPTDELLRSPR HAATCDLLAAIPSLPALYQP
Sequences:
>Translated_260_residues MSISGTLPFISLQQVCRRYSSQSDGLKPTDLNLYPEERVGLVGCSGAGKSTLLRLLLALETADAGHILCQGNAVHPTAVN PLRWYRRLVQYVPQDAHASLNPRHTVAELIIEPLRQLAPRQDLSIAAERALRQVELDDHLIHARPGQLSGGQAQRVALAR AIALQPRFLIADEPVSGLDLPLRQQIIGLLDKITRQQNMGMLLVSHDISLVAALCQRTLVMACGVIVEDRPTDELLRSPR HAATCDLLAAIPSLPALYQP >Mature_259_residues SISGTLPFISLQQVCRRYSSQSDGLKPTDLNLYPEERVGLVGCSGAGKSTLLRLLLALETADAGHILCQGNAVHPTAVNP LRWYRRLVQYVPQDAHASLNPRHTVAELIIEPLRQLAPRQDLSIAAERALRQVELDDHLIHARPGQLSGGQAQRVALARA IALQPRFLIADEPVSGLDLPLRQQIIGLLDKITRQQNMGMLLVSHDISLVAALCQRTLVMACGVIVEDRPTDELLRSPRH AATCDLLAAIPSLPALYQP
Specific function: Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system [H]
COG id: COG4608
COG function: function code E; ABC-type oligopeptide transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9961250, Length=243, Percent_Identity=30.0411522633745, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI4505771, Length=243, Percent_Identity=30.0411522633745, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI9961252, Length=243, Percent_Identity=30.0411522633745, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI255708477, Length=227, Percent_Identity=29.9559471365639, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI42490749, Length=206, Percent_Identity=29.126213592233, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI153792144, Length=193, Percent_Identity=27.979274611399, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI42741659, Length=246, Percent_Identity=28.4552845528455, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI21536378, Length=228, Percent_Identity=27.1929824561404, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI31657092, Length=225, Percent_Identity=25.3333333333333, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1789891, Length=233, Percent_Identity=42.0600858369099, Blast_Score=159, Evalue=1e-40, Organism=Escherichia coli, GI145693107, Length=237, Percent_Identity=39.2405063291139, Blast_Score=159, Evalue=2e-40, Organism=Escherichia coli, GI1787500, Length=225, Percent_Identity=38.2222222222222, Blast_Score=157, Evalue=8e-40, Organism=Escherichia coli, GI1789962, Length=231, Percent_Identity=34.6320346320346, Blast_Score=134, Evalue=9e-33, Organism=Escherichia coli, GI1788506, Length=245, Percent_Identity=35.9183673469388, Blast_Score=127, Evalue=6e-31, Organism=Escherichia coli, GI1787758, Length=230, Percent_Identity=36.0869565217391, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1787370, Length=229, Percent_Identity=34.9344978165939, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1787547, Length=230, Percent_Identity=30.8695652173913, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1789672, Length=245, Percent_Identity=33.0612244897959, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI1789963, Length=229, Percent_Identity=34.4978165938865, Blast_Score=110, Evalue=6e-26, Organism=Escherichia coli, GI48994883, Length=239, Percent_Identity=31.7991631799163, Blast_Score=106, Evalue=1e-24, Organism=Escherichia coli, GI1787029, Length=232, Percent_Identity=32.7586206896552, Blast_Score=106, Evalue=1e-24, Organism=Escherichia coli, GI48994997, Length=247, Percent_Identity=29.1497975708502, Blast_Score=106, Evalue=1e-24, Organism=Escherichia coli, GI87081709, Length=254, Percent_Identity=31.496062992126, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1787759, Length=261, Percent_Identity=29.8850574712644, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1788225, Length=247, Percent_Identity=32.3886639676113, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1789890, Length=219, Percent_Identity=34.2465753424658, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1788761, Length=234, Percent_Identity=33.7606837606838, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1786872, Length=212, Percent_Identity=33.9622641509434, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI87082267, Length=217, Percent_Identity=35.4838709677419, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI1786398, Length=202, Percent_Identity=33.1683168316832, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI87081834, Length=219, Percent_Identity=36.5296803652968, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI87081791, Length=245, Percent_Identity=29.7959183673469, Blast_Score=97, Evalue=7e-22, Organism=Escherichia coli, GI1789873, Length=216, Percent_Identity=32.8703703703704, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1786253, Length=210, Percent_Identity=37.6190476190476, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1787548, Length=268, Percent_Identity=26.865671641791, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1786319, Length=249, Percent_Identity=27.710843373494, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1787089, Length=197, Percent_Identity=36.0406091370558, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1789032, Length=239, Percent_Identity=32.6359832635983, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1788165, Length=213, Percent_Identity=34.2723004694836, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1787712, Length=208, Percent_Identity=36.0576923076923, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787105, Length=233, Percent_Identity=31.7596566523605, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1787164, Length=222, Percent_Identity=35.1351351351351, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1788450, Length=237, Percent_Identity=29.957805907173, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1786703, Length=196, Percent_Identity=35.7142857142857, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1790467, Length=230, Percent_Identity=29.1304347826087, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI1789593, Length=215, Percent_Identity=33.0232558139535, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1790544, Length=239, Percent_Identity=28.4518828451883, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1790162, Length=239, Percent_Identity=28.0334728033473, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787792, Length=238, Percent_Identity=29.4117647058824, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1788644, Length=204, Percent_Identity=28.921568627451, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1786698, Length=200, Percent_Identity=29.5, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1787143, Length=217, Percent_Identity=31.3364055299539, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786345, Length=238, Percent_Identity=28.1512605042017, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI48995001, Length=220, Percent_Identity=28.1818181818182, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1790190, Length=214, Percent_Identity=26.6355140186916, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1789864, Length=247, Percent_Identity=26.3157894736842, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786981, Length=195, Percent_Identity=32.3076923076923, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787112, Length=243, Percent_Identity=30.0411522633745, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787182, Length=230, Percent_Identity=28.695652173913, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1790534, Length=211, Percent_Identity=28.9099526066351, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1786563, Length=200, Percent_Identity=31, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI87082268, Length=231, Percent_Identity=30.3030303030303, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1788897, Length=212, Percent_Identity=25, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI48994943, Length=215, Percent_Identity=28.8372093023256, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI2367384, Length=219, Percent_Identity=26.4840182648402, Blast_Score=61, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17558664, Length=231, Percent_Identity=30.7359307359307, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI193202349, Length=235, Percent_Identity=28.936170212766, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17569143, Length=220, Percent_Identity=33.6363636363636, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI193211017, Length=236, Percent_Identity=29.6610169491525, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI193211015, Length=236, Percent_Identity=29.6610169491525, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI71996809, Length=236, Percent_Identity=29.6610169491525, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17569145, Length=247, Percent_Identity=31.1740890688259, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI25146777, Length=248, Percent_Identity=29.0322580645161, Blast_Score=78, Evalue=6e-15, Organism=Caenorhabditis elegans, GI212646699, Length=236, Percent_Identity=30.0847457627119, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193209708, Length=223, Percent_Identity=30.9417040358744, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17567269, Length=237, Percent_Identity=31.2236286919831, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17565938, Length=219, Percent_Identity=29.2237442922374, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193208177, Length=212, Percent_Identity=30.188679245283, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71996550, Length=191, Percent_Identity=30.8900523560209, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI115532730, Length=182, Percent_Identity=31.3186813186813, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI115533608, Length=217, Percent_Identity=27.6497695852535, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17567265, Length=239, Percent_Identity=27.1966527196653, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17541710, Length=238, Percent_Identity=30.2521008403361, Blast_Score=68, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6323217, Length=226, Percent_Identity=30.9734513274336, Blast_Score=71, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6322640, Length=242, Percent_Identity=27.6859504132231, Blast_Score=66, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6320339, Length=241, Percent_Identity=26.5560165975104, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI24659289, Length=238, Percent_Identity=31.0924369747899, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI85726357, Length=246, Percent_Identity=28.8617886178862, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI24641565, Length=238, Percent_Identity=30.2521008403361, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI281363262, Length=255, Percent_Identity=27.843137254902, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24653245, Length=251, Percent_Identity=27.8884462151394, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI28574150, Length=221, Percent_Identity=27.6018099547511, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI116007328, Length=221, Percent_Identity=27.6018099547511, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24582014, Length=231, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24582012, Length=231, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24666836, Length=229, Percent_Identity=30.1310043668122, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI21357907, Length=232, Percent_Identity=28.448275862069, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI17136662, Length=235, Percent_Identity=28.0851063829787, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI23397593, Length=240, Percent_Identity=29.5833333333333, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI17136592, Length=204, Percent_Identity=29.4117647058824, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR015858 - InterPro: IPR003593 - InterPro: IPR014137 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: =3.6.3.24 [H]
Molecular weight: Translated: 28431; Mature: 28300
Theoretical pI: Translated: 7.87; Mature: 7.87
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSISGTLPFISLQQVCRRYSSQSDGLKPTDLNLYPEERVGLVGCSGAGKSTLLRLLLALE CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCEEECCCCCHHHHHHHHHHHH TADAGHILCQGNAVHPTAVNPLRWYRRLVQYVPQDAHASLNPRHTVAELIIEPLRQLAPR CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCC QDLSIAAERALRQVELDDHLIHARPGQLSGGQAQRVALARAIALQPRFLIADEPVSGLDL CCHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCC PLRQQIIGLLDKITRQQNMGMLLVSHDISLVAALCQRTLVMACGVIVEDRPTDELLRSPR HHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHCCC HAATCDLLAAIPSLPALYQP CHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure SISGTLPFISLQQVCRRYSSQSDGLKPTDLNLYPEERVGLVGCSGAGKSTLLRLLLALE CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCEEECCCCCHHHHHHHHHHHH TADAGHILCQGNAVHPTAVNPLRWYRRLVQYVPQDAHASLNPRHTVAELIIEPLRQLAPR CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCC QDLSIAAERALRQVELDDHLIHARPGQLSGGQAQRVALARAIALQPRFLIADEPVSGLDL CCHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCC PLRQQIIGLLDKITRQQNMGMLLVSHDISLVAALCQRTLVMACGVIVEDRPTDELLRSPR HHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHCCC HAATCDLLAAIPSLPALYQP CHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]