BacMap

Definition	Serratia proteamaculans 568 chromosome, complete genome.
Accession	NC_009832
Length	5,448,853

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The map label for this gene is yciK [H]

Identifier: 157370900

GI number: 157370900

Start: 2930863

End: 2931693

Strand: Direct

Name: yciK [H]

Synonym: Spro_2660

Alternate gene names: 157370900

Gene position: 2930863-2931693 (Clockwise)

Preceding gene: 157370898

Following gene: 157370901

Centisome position: 53.79

GC content: 56.08

Gene sequence:

>831_bases
ATGGCCTCTCAACCCACCCCTCTCCCCGATGCAAGCGGGAGACCAGCCACCAAGGCGCGAGGAATTATTGTGCATTACCA
ACCTAAACAAGATTTGCTGGAAAAACGTATTATTTTGGTCACCGGCGCCGGTGATGGTATCGGTCGCGAAGCGGCACTCA
CTTACGCAAAATTTGGTGCGCAACTGGTGCTGTTAGGCCGTACCGAAAGCAAACTGCAGGCGGTGCAAGCCGAAATCGCC
AGGCTCAGCAGTGCGCCAACCTACATCATCACCCTGGATCTGCTGCATACCACTCAGGAACAATGCCAACAGGTGGCCGA
AGAGCTGGCGACGCAGGTCCCGCGCCTCGACGGCGTGCTGCATAATGCCGGGCTACTCGGCGATATCGCCCCGATGGCCG
AGCTGTCGATGGAGATGTGGAACGAGGTGATGCAGGTGAATGTCAACGCGACCTTTATGCTCACCCAGGCGCTGTTGCCG
CTGCTATTGAAATCCAATGCCGGATCGCTGGTCTTTACCAGCTCCAGCGTCGGCCGTAGCGGGCGTGCTAACTGGGGTGC
CTATGCGGTGTCCAAGTTTGCCACCGAAGGCATGATGCAGGTGTTGGCCGATGAATATAAAAGTCGCAATCTTCGGGTAA
ATTGCATCAATCCTGGTGGAACACGCACTCAAATGCGCGCAACGGCTTTCCCGCATGAAGACAAAAGCAAGCTGAAAACT
CCGGCTGATATTATGCCGCTTTACCTCTATCTGATGGGTGACGACAGCCGCCGTAAAACCGGCATGAGCTTCGACGCACA
GCCAAACCGTAAACCCGGCGCCGCCGAATAA

Upstream 100 bases:

>100_bases
AAATACGATCCATTTCAGGCATATAACACGGATTATTCATCAACATGATGACTCAAATTCGCTGCGGGGCCTTGCATGCG
GTCGAGCCTTAGCTCCTGTC

Downstream 100 bases:

>100_bases
AAGGGGCTTTACCATGGCTGAAGATCGCCACCAACAACGTCAGCAACGCCTGAAAGAACAGGTCGATGCCCGTATCGCTG
CGGCTCAGGACGCACGGGGT

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MASQPTPLPDASGRPATKARGIIVHYQPKQDLLEKRIILVTGAGDGIGREAALTYAKFGAQLVLLGRTESKLQAVQAEIA
RLSSAPTYIITLDLLHTTQEQCQQVAEELATQVPRLDGVLHNAGLLGDIAPMAELSMEMWNEVMQVNVNATFMLTQALLP
LLLKSNAGSLVFTSSSVGRSGRANWGAYAVSKFATEGMMQVLADEYKSRNLRVNCINPGGTRTQMRATAFPHEDKSKLKT
PADIMPLYLYLMGDDSRRKTGMSFDAQPNRKPGAAE

Sequences:

>Translated_276_residues
MASQPTPLPDASGRPATKARGIIVHYQPKQDLLEKRIILVTGAGDGIGREAALTYAKFGAQLVLLGRTESKLQAVQAEIA
RLSSAPTYIITLDLLHTTQEQCQQVAEELATQVPRLDGVLHNAGLLGDIAPMAELSMEMWNEVMQVNVNATFMLTQALLP
LLLKSNAGSLVFTSSSVGRSGRANWGAYAVSKFATEGMMQVLADEYKSRNLRVNCINPGGTRTQMRATAFPHEDKSKLKT
PADIMPLYLYLMGDDSRRKTGMSFDAQPNRKPGAAE
>Mature_275_residues
ASQPTPLPDASGRPATKARGIIVHYQPKQDLLEKRIILVTGAGDGIGREAALTYAKFGAQLVLLGRTESKLQAVQAEIAR
LSSAPTYIITLDLLHTTQEQCQQVAEELATQVPRLDGVLHNAGLLGDIAPMAELSMEMWNEVMQVNVNATFMLTQALLPL
LLKSNAGSLVFTSSSVGRSGRANWGAYAVSKFATEGMMQVLADEYKSRNLRVNCINPGGTRTQMRATAFPHEDKSKLKTP
ADIMPLYLYLMGDDSRRKTGMSFDAQPNRKPGAAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4504505, Length=239, Percent_Identity=28.0334728033473, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=27.9352226720648, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI40548397, Length=198, Percent_Identity=32.3232323232323, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI214010158, Length=198, Percent_Identity=32.3232323232323, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI214010156, Length=198, Percent_Identity=32.3232323232323, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI22758144, Length=198, Percent_Identity=32.3232323232323, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI20149619, Length=202, Percent_Identity=28.7128712871287, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI32455239, Length=210, Percent_Identity=31.4285714285714, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI5031765, Length=210, Percent_Identity=31.4285714285714, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI142976729, Length=193, Percent_Identity=29.0155440414508, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI66933014, Length=245, Percent_Identity=28.1632653061224, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI126723191, Length=190, Percent_Identity=28.9473684210526, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI15277342, Length=267, Percent_Identity=28.0898876404494, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI157739938, Length=193, Percent_Identity=26.4248704663212, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI210032110, Length=188, Percent_Identity=28.7234042553192, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI40807363, Length=198, Percent_Identity=28.7878787878788, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI33667109, Length=197, Percent_Identity=26.9035532994924, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI4503817, Length=202, Percent_Identity=25.7425742574257, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI5031737, Length=197, Percent_Identity=26.9035532994924, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI10190704, Length=189, Percent_Identity=23.2804232804233, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4557649, Length=188, Percent_Identity=26.5957446808511, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI25282469, Length=206, Percent_Identity=27.6699029126214, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI7657478, Length=225, Percent_Identity=28, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI38348362, Length=177, Percent_Identity=32.7683615819209, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI7705925, Length=244, Percent_Identity=25.4098360655738, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI59889578, Length=171, Percent_Identity=29.2397660818713, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI38424085, Length=177, Percent_Identity=32.7683615819209, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI19923817, Length=262, Percent_Identity=21.3740458015267, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=25.3968253968254, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI1787526, Length=253, Percent_Identity=73.5177865612648, Blast_Score=375, Evalue=1e-105,
Organism=Escherichia coli, GI1787335, Length=237, Percent_Identity=27.8481012658228, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1790717, Length=197, Percent_Identity=27.4111675126904, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789378, Length=240, Percent_Identity=28.75, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786812, Length=197, Percent_Identity=27.4111675126904, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786701, Length=192, Percent_Identity=29.1666666666667, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082100, Length=262, Percent_Identity=27.4809160305344, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787905, Length=228, Percent_Identity=26.3157894736842, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI2367175, Length=242, Percent_Identity=26.0330578512397, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789208, Length=202, Percent_Identity=26.7326732673267, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1787820, Length=212, Percent_Identity=24.5283018867925, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788459, Length=238, Percent_Identity=22.2689075630252, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=193, Percent_Identity=30.0518134715026, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI71994600, Length=244, Percent_Identity=29.0983606557377, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71997402, Length=255, Percent_Identity=29.0196078431373, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17568967, Length=243, Percent_Identity=28.8065843621399, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17551412, Length=208, Percent_Identity=29.3269230769231, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17564282, Length=193, Percent_Identity=30.0518134715026, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI115534694, Length=244, Percent_Identity=28.2786885245902, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17555706, Length=251, Percent_Identity=25.8964143426295, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17560676, Length=210, Percent_Identity=27.1428571428571, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17570069, Length=207, Percent_Identity=28.0193236714976, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17544670, Length=198, Percent_Identity=28.7878787878788, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI193203117, Length=200, Percent_Identity=29, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=205, Percent_Identity=27.8048780487805, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193203115, Length=200, Percent_Identity=29, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=195, Percent_Identity=28.2051282051282, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=213, Percent_Identity=28.169014084507, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=243, Percent_Identity=25.9259259259259, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=229, Percent_Identity=24.4541484716157, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=183, Percent_Identity=25.6830601092896, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17567345, Length=201, Percent_Identity=27.363184079602, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17531453, Length=198, Percent_Identity=26.2626262626263, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=238, Percent_Identity=24.7899159663866, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193210355, Length=202, Percent_Identity=27.2277227722772, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI25147288, Length=196, Percent_Identity=27.5510204081633, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=185, Percent_Identity=28.1081081081081, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=240, Percent_Identity=23.75, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=210, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17562904, Length=213, Percent_Identity=23.0046948356808, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115534660, Length=207, Percent_Identity=28.5024154589372, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17560176, Length=191, Percent_Identity=26.7015706806283, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI212646214, Length=212, Percent_Identity=25, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17538182, Length=213, Percent_Identity=27.2300469483568, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI25152911, Length=207, Percent_Identity=26.0869565217391, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI193204405, Length=205, Percent_Identity=28.780487804878, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17562910, Length=195, Percent_Identity=24.6153846153846, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=231, Percent_Identity=26.4069264069264, Blast_Score=86, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6322227, Length=199, Percent_Identity=31.1557788944724, Blast_Score=86, Evalue=7e-18,
Organism=Saccharomyces cerevisiae, GI6323882, Length=227, Percent_Identity=28.1938325991189, Blast_Score=85, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6319635, Length=148, Percent_Identity=31.0810810810811, Blast_Score=67, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6322226, Length=195, Percent_Identity=25.6410256410256, Blast_Score=65, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=29.3172690763052, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI21355319, Length=244, Percent_Identity=27.0491803278689, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=28.968253968254, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI23397609, Length=194, Percent_Identity=31.9587628865979, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI21357041, Length=194, Percent_Identity=29.8969072164948, Blast_Score=91, Evalue=6e-19,
Organism=Drosophila melanogaster, GI21358495, Length=209, Percent_Identity=29.6650717703349, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24643142, Length=206, Percent_Identity=34.9514563106796, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24640492, Length=184, Percent_Identity=29.8913043478261, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI281364892, Length=200, Percent_Identity=31, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI18859837, Length=229, Percent_Identity=31.4410480349345, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24639444, Length=247, Percent_Identity=27.9352226720648, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI28574402, Length=211, Percent_Identity=32.2274881516588, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI161076933, Length=191, Percent_Identity=29.8429319371728, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24584748, Length=191, Percent_Identity=29.8429319371728, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24584744, Length=211, Percent_Identity=32.2274881516588, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI45553409, Length=213, Percent_Identity=27.2300469483568, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24647948, Length=213, Percent_Identity=27.2300469483568, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24647946, Length=213, Percent_Identity=27.2300469483568, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI21357673, Length=246, Percent_Identity=25.2032520325203, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45554248, Length=211, Percent_Identity=28.436018957346, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24640117, Length=211, Percent_Identity=28.436018957346, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 29974; Mature: 29843

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASQPTPLPDASGRPATKARGIIVHYQPKQDLLEKRIILVTGAGDGIGREAALTYAKFGA
CCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHCCEEEEEECCCCCCCHHHHHHHHHCCC
QLVLLGRTESKLQAVQAEIARLSSAPTYIITLDLLHTTQEQCQQVAEELATQVPRLDGVL
EEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHH
HNAGLLGDIAPMAELSMEMWNEVMQVNVNATFMLTQALLPLLLKSNAGSLVFTSSSVGRS
HCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
GRANWGAYAVSKFATEGMMQVLADEYKSRNLRVNCINPGGTRTQMRATAFPHEDKSKLKT
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCHHHCCC
PADIMPLYLYLMGDDSRRKTGMSFDAQPNRKPGAAE
CHHHHEEEEEEECCCCHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ASQPTPLPDASGRPATKARGIIVHYQPKQDLLEKRIILVTGAGDGIGREAALTYAKFGA
CCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHCCEEEEEECCCCCCCHHHHHHHHHCCC
QLVLLGRTESKLQAVQAEIARLSSAPTYIITLDLLHTTQEQCQQVAEELATQVPRLDGVL
EEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHH
HNAGLLGDIAPMAELSMEMWNEVMQVNVNATFMLTQALLPLLLKSNAGSLVFTSSSVGRS
HCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
GRANWGAYAVSKFATEGMMQVLADEYKSRNLRVNCINPGGTRTQMRATAFPHEDKSKLKT
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCHHHCCC
PADIMPLYLYLMGDDSRRKTGMSFDAQPNRKPGAAE
CHHHHEEEEEEECCCCHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1885549 [H]