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The map label for this gene is araQ [H]

Identifier: 157370813

GI number: 157370813

Start: 2829623

End: 2830441

Strand: Direct

Name: araQ [H]

Synonym: Spro_2573

Alternate gene names: 157370813

Gene position: 2829623-2830441 (Clockwise)

Preceding gene: 157370812

Following gene: 157370814

Centisome position: 51.93

GC content: 56.53

Gene sequence:

>819_bases
ATGAGCATAAGTAAAAGAACGCTGGTGTATCTGTTTATGGTGTTGGCGGCGCTGGCCTCGGTGGTGCCTTTTATCTGGAT
GCTGGTGACTTCGCTGAAAACCCAGGCCGAAAGCATCCAGATCCCACTGACGCTGTTACCGGCACACCCCAGCCTGCAGG
CCTACGGCAAGGTGATGCGTGAAATTCCTTTCACCGACTTCTATGTGAACTCGCTGCTGGCGACCTTTTTCACCGTCACG
CTGCAGATGGTGATCGCCACCATGGCTGCCTACGGTTTCTCTCGCCTGCACTTTCGCGGCCGTGATGCGGTGTTCCTGGT
GTGTATTTCGATCCTGATGGTGCCTGGTCAGGCCTTTTTGATCCCGCAGTTTTTGGTGGTGCAGAAACTGGGGTTGGTGA
ACAGCATCACCGGGCTGGTTTTGCCGGGTATTTTCAGTATTTACGCCACCTTCCTGCTGCGCCAGTTCTTCCTGGCGGTG
CCGAAAGAGATGGAAGAAGCGGCACTGATCGACGGCTACAGCTACTTCGCTATCTTCTGGCGCATCATGCTGCCGCTGAT
CCGCCCCGGCATTATCGCCTGCATCATCATCAACGGCCTGTGGAGCTGGAACAACCTGATGTGGCCGCTGATCGTCAACA
CCACTACCGAAAAACTGACGCTGCCGGTCGGGCTGGCATCGCTGTCGAGCCGTGCCGGAGTGGAATACCCGCTGCTGATG
GCCGGTGCGCTGATGGCGGTGATCCCGATGCTGATGCTGTTCATTCTTTTCCAACGCTACTTCATCCAGGGCATCGCCAG
CGCTGGGGTAAAAGGCTAA

Upstream 100 bases:

>100_bases
CTCCGCCATCACCGTGGTGCTGTTCGCCGTCACCCTGCTGATCACCCTGATTCAAATGATGATTGGCAAACGCCTGAAAG
TCAGCTGAGGAGCCACGACG

Downstream 100 bases:

>100_bases
CCGCGTACACAAGGTAAATAATATGGCCGGTATACAGTTAAACAGTGTGAAGAAGGTTTATCCCAACGGGTTCAAAGCAT
TGCACGGGATCGATCTGGAT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MSISKRTLVYLFMVLAALASVVPFIWMLVTSLKTQAESIQIPLTLLPAHPSLQAYGKVMREIPFTDFYVNSLLATFFTVT
LQMVIATMAAYGFSRLHFRGRDAVFLVCISILMVPGQAFLIPQFLVVQKLGLVNSITGLVLPGIFSIYATFLLRQFFLAV
PKEMEEAALIDGYSYFAIFWRIMLPLIRPGIIACIIINGLWSWNNLMWPLIVNTTTEKLTLPVGLASLSSRAGVEYPLLM
AGALMAVIPMLMLFILFQRYFIQGIASAGVKG

Sequences:

>Translated_272_residues
MSISKRTLVYLFMVLAALASVVPFIWMLVTSLKTQAESIQIPLTLLPAHPSLQAYGKVMREIPFTDFYVNSLLATFFTVT
LQMVIATMAAYGFSRLHFRGRDAVFLVCISILMVPGQAFLIPQFLVVQKLGLVNSITGLVLPGIFSIYATFLLRQFFLAV
PKEMEEAALIDGYSYFAIFWRIMLPLIRPGIIACIIINGLWSWNNLMWPLIVNTTTEKLTLPVGLASLSSRAGVEYPLLM
AGALMAVIPMLMLFILFQRYFIQGIASAGVKG
>Mature_271_residues
SISKRTLVYLFMVLAALASVVPFIWMLVTSLKTQAESIQIPLTLLPAHPSLQAYGKVMREIPFTDFYVNSLLATFFTVTL
QMVIATMAAYGFSRLHFRGRDAVFLVCISILMVPGQAFLIPQFLVVQKLGLVNSITGLVLPGIFSIYATFLLRQFFLAVP
KEMEEAALIDGYSYFAIFWRIMLPLIRPGIIACIIINGLWSWNNLMWPLIVNTTTEKLTLPVGLASLSSRAGVEYPLLMA
GALMAVIPMLMLFILFQRYFIQGIASAGVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=280, Percent_Identity=30, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1789860, Length=235, Percent_Identity=28.0851063829787, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30259; Mature: 30128

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSISKRTLVYLFMVLAALASVVPFIWMLVTSLKTQAESIQIPLTLLPAHPSLQAYGKVMR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHHHHH
EIPFTDFYVNSLLATFFTVTLQMVIATMAAYGFSRLHFRGRDAVFLVCISILMVPGQAFL
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHH
IPQFLVVQKLGLVNSITGLVLPGIFSIYATFLLRQFFLAVPKEMEEAALIDGYSYFAIFW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHH
RIMLPLIRPGIIACIIINGLWSWNNLMWPLIVNTTTEKLTLPVGLASLSSRAGVEYPLLM
HHHHHHHHHHHHHHHHHHHHHHCCCCEEHHEEECCCHHEEECHHHHHHHHCCCCCHHHHH
AGALMAVIPMLMLFILFQRYFIQGIASAGVKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SISKRTLVYLFMVLAALASVVPFIWMLVTSLKTQAESIQIPLTLLPAHPSLQAYGKVMR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHHHHH
EIPFTDFYVNSLLATFFTVTLQMVIATMAAYGFSRLHFRGRDAVFLVCISILMVPGQAFL
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHH
IPQFLVVQKLGLVNSITGLVLPGIFSIYATFLLRQFFLAVPKEMEEAALIDGYSYFAIFW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHH
RIMLPLIRPGIIACIIINGLWSWNNLMWPLIVNTTTEKLTLPVGLASLSSRAGVEYPLLM
HHHHHHHHHHHHHHHHHHHHHHCCCCEEHHEEECCCHHEEECHHHHHHHHCCCCCHHHHH
AGALMAVIPMLMLFILFQRYFIQGIASAGVKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]