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The map label for this gene is amyD [H]

Identifier: 157370812

GI number: 157370812

Start: 2828672

End: 2829610

Strand: Direct

Name: amyD [H]

Synonym: Spro_2572

Alternate gene names: 157370812

Gene position: 2828672-2829610 (Clockwise)

Preceding gene: 157370811

Following gene: 157370813

Centisome position: 51.91

GC content: 54.74

Gene sequence:

>939_bases
ATGTCGCTGGCAGAAAGCTACGGTGCCCTAAAACAACAAAAAAGTACCCCACGACCCGCACTCAGCCGCCTGGAGCGTGC
CGAGCGTTTCTGGGGCTGGGTGATGATCTTGCCGTTGCTGATTGGTTTGACGGTGTTTTACCTGGTCCCCTTTTTACAGA
ACATCTTTTACAGTTTTACCGACCTCAACCAATTTATGCGCTGGAGCACCCTCAGCGTCGATAACTACGTCAATCTGTTT
GAAGACGACGACTTTTACACCGCCGCCGGCAATACGCTGTTCTATGTGGTGGTGTGTGTCCCCGTCAGCCTGAGCCTGTC
GCTGCTGCTGGCGATTGGCCTGAACCAGAACATTCGCGGCAAGGCGCTGCTGCGCACCCTGCTGTTCTTGCCGGCGGTCA
CCATGCCTGCCGCCGTGGCGATGGTCTGGCAATGGCTGTTCAACAAGGATTTCGGTCTGATCAACCAGGCGATTGGCCTG
CTGGGGATTTCGCCGGTGGCCTGGCTGTCCGACCCGGACGTGGTGCGCATCAGCGTTTCCATCATCATTATCTGGTCGTC
GCTGGCGTTGAAAATCATCATTTTACTGGCCGGGTTACAAAGCATTCCACGTCAACTGTATGAGGCCGCCGACATTGACG
GTATCAGCACCCTGCGCCGCTTCTTTTGCATCACCCTGCCGATGATGGTGCCAACGCTGTTCTTCGTTTCGGTGATGAGC
TTTATCGAGATCCTGCAAATATTCGACGTGGTGTTCCTGATGTTCGACCGCGCGTTGGTGGAAAGCGACGTGATGACCGT
CACCAACCTGTTTTACAAGTATGCCTTTTACCTGCAGGAGAAAGGTTACGCCTCCGCCATCACCGTGGTGCTGTTCGCCG
TCACCCTGCTGATCACCCTGATTCAAATGATGATTGGCAAACGCCTGAAAGTCAGCTGA

Upstream 100 bases:

>100_bases
ACGCGTAATGGAGCAGTAATCACCCCGAGCCGGTAGCGCCTGCCCGAAGGCGCACCGGCTGCGGAATACCGCAGAGCAGT
TACAGGTGAGGAAAGGCAAC

Downstream 100 bases:

>100_bases
GGAGCCACGACGATGAGCATAAGTAAAAGAACGCTGGTGTATCTGTTTATGGTGTTGGCGGCGCTGGCCTCGGTGGTGCC
TTTTATCTGGATGCTGGTGA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MSLAESYGALKQQKSTPRPALSRLERAERFWGWVMILPLLIGLTVFYLVPFLQNIFYSFTDLNQFMRWSTLSVDNYVNLF
EDDDFYTAAGNTLFYVVVCVPVSLSLSLLLAIGLNQNIRGKALLRTLLFLPAVTMPAAVAMVWQWLFNKDFGLINQAIGL
LGISPVAWLSDPDVVRISVSIIIIWSSLALKIIILLAGLQSIPRQLYEAADIDGISTLRRFFCITLPMMVPTLFFVSVMS
FIEILQIFDVVFLMFDRALVESDVMTVTNLFYKYAFYLQEKGYASAITVVLFAVTLLITLIQMMIGKRLKVS

Sequences:

>Translated_312_residues
MSLAESYGALKQQKSTPRPALSRLERAERFWGWVMILPLLIGLTVFYLVPFLQNIFYSFTDLNQFMRWSTLSVDNYVNLF
EDDDFYTAAGNTLFYVVVCVPVSLSLSLLLAIGLNQNIRGKALLRTLLFLPAVTMPAAVAMVWQWLFNKDFGLINQAIGL
LGISPVAWLSDPDVVRISVSIIIIWSSLALKIIILLAGLQSIPRQLYEAADIDGISTLRRFFCITLPMMVPTLFFVSVMS
FIEILQIFDVVFLMFDRALVESDVMTVTNLFYKYAFYLQEKGYASAITVVLFAVTLLITLIQMMIGKRLKVS
>Mature_311_residues
SLAESYGALKQQKSTPRPALSRLERAERFWGWVMILPLLIGLTVFYLVPFLQNIFYSFTDLNQFMRWSTLSVDNYVNLFE
DDDFYTAAGNTLFYVVVCVPVSLSLSLLLAIGLNQNIRGKALLRTLLFLPAVTMPAAVAMVWQWLFNKDFGLINQAIGLL
GISPVAWLSDPDVVRISVSIIIIWSSLALKIIILLAGLQSIPRQLYEAADIDGISTLRRFFCITLPMMVPTLFFVSVMSF
IEILQIFDVVFLMFDRALVESDVMTVTNLFYKYAFYLQEKGYASAITVVLFAVTLLITLIQMMIGKRLKVS

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=257, Percent_Identity=31.1284046692607, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789861, Length=298, Percent_Identity=28.5234899328859, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1790465, Length=213, Percent_Identity=29.1079812206573, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35312; Mature: 35180

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLAESYGALKQQKSTPRPALSRLERAERFWGWVMILPLLIGLTVFYLVPFLQNIFYSFT
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLNQFMRWSTLSVDNYVNLFEDDDFYTAAGNTLFYVVVCVPVSLSLSLLLAIGLNQNIRG
HHHHHHHHHHCCHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
KALLRTLLFLPAVTMPAAVAMVWQWLFNKDFGLINQAIGLLGISPVAWLSDPDVVRISVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHCCCCCCEEEEEHH
IIIIWSSLALKIIILLAGLQSIPRQLYEAADIDGISTLRRFFCITLPMMVPTLFFVSVMS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIEILQIFDVVFLMFDRALVESDVMTVTNLFYKYAFYLQEKGYASAITVVLFAVTLLITL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
IQMMIGKRLKVS
HHHHHCCCCCCC
>Mature Secondary Structure 
SLAESYGALKQQKSTPRPALSRLERAERFWGWVMILPLLIGLTVFYLVPFLQNIFYSFT
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH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HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]