| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is ybiO [H]
Identifier: 157369719
GI number: 157369719
Start: 1611031
End: 1613244
Strand: Reverse
Name: ybiO [H]
Synonym: Spro_1476
Alternate gene names: 157369719
Gene position: 1613244-1611031 (Counterclockwise)
Preceding gene: 157369720
Following gene: 157369712
Centisome position: 29.61
GC content: 56.23
Gene sequence:
>2214_bases ATGCCCGCAACCGCATACTCCCGATTAGGTTCTCATCTGCGAGAACGCTGGTTTCCCCTGTTACTGCTGCTGATAGCCTG CACAGTTTCCCCATTGGCAATGGCGCAATCCGCGCAGAAAACCGCCCCCGTTGACCAAAGCCAACAGCAAAAAGCCTCTT ACGCCGCACTGGCGGATATTCTGCAAGACGATAAGGCCCGTGCCGCGCTGATCGACCACCTCAGACAGGCCGCAGATCAA TCTGCCAACAGTCCGCCGAAAACAGAAGCGTCAGAAACGCCAGAGTCGCTGAGCGACAATCTGAGCAATCTGGCACAAGG GGGCATCAGCAGCGTTAACCAAAGGCTGAACTCGCTGCAAAAGCTGATCGACTCGGGGCCAAAACGCAGTTTTAATCCCG ACAGTTTTTTCCGCGCCCTGGGCTACTTTCTGCTAACGGTCGCGGTGACCTTTGCCATCTTCCATCTGATCCGTCGGCTG ATCCACCCGCTGTACAAACGCATGGGCAGTTGGGGACACAACGCCAAACTGCAGCAGGGGCCGTGGTATAAACTGCCGAC GGCCATCCTCGGCGCTTTCGCCGTCGATCTGCTGGTATTGCTGCTGGCGCTGGCGGCGGGCAACCTGCTTGCTCGCCATG TTAATGCCGACAGCGCGACCATCCTGCGCTTGCAAACCCTGTTTCTTAACGCCTTTGCGGTTATCGAATTCTTCAAGGCG ATACTGCGGCTGATTTTCTCGCCCAACTTCGATTATCTGCGCCCCTTCCCGTTTAGCGATGCCAGCGCCCACTACTGGAA CCAGCGTCTCGCCTGGCTGAGCGGCCTGATTGGCTACGGTCTGATGGTGGTGGTGCCGGTAGTGGCGACGCAAATCAGCT ATCCGGCTGCGGCGGCCGCCAATCTGATTATCATGCTGGCCCTGACGCTATATGCGGTGGCACTGATCCTGCGTAACCGC AAACCGATACAACGGCAAATCAACCTGCTGGCCGAACGATCCATGGCATTTTTCAGCATTATTTTGCGCGGTCTGGGCCA CGTCTGGCACCTGCTGGCGATCGCCTATTTCCTGGTGTTATTTGCGCTGTCGCAGTTTGATATCGGCAACAGCCTGCGCT TTATGATGACCGCGACGGTGAAAAGCCTGGTGGTCGTTGGCCTCGGCGCCCTGCTTTCCGGCATGCTGACCCGTTGGATT TTCCGACGAATCTCACTGCCGGAAGACGTCAACCGACGCTACCCAATGCTGGAACGACGCATTAACTCCTATATTCCCAA TGGGTTGAAAATACTGCGGGTGATAGTGGTGTTGGCGGTGACGCTGCTGCTGTTTGACGCTTGGCATCTGATCAATTTGT ACCAGTGGGCCGGCAGCGAAAACGGCGAGAAAATCATTGGCGGGCTGGTGCATATCCTGCTGATTGTGGTGATTGCCGTG TTCAGCTGGACGCTAATGGCCAGTATTATCGAACACCGCCTGGCATTGGAACTGAGCAACGGTATTCGCCCGAGCGCGCG TGAACGTACCTTATTGACGCTGTTTCGCAACGTACTGGCCATCGTTATCAGCACCATTACCATCATGATTGTGCTGTCAC AGGTGGGGATTAACATTGCGCCCCTGCTGGCCGGTGCCGGAGCACTGGGGCTGGCTATCAGCTTTGGGGCGCAAACGCTG GTGAAAGATGTGATTACCGGGGTATTCATCCAGTTCGAAAACGGCATGAATACCGGCGAATATGTCACCGTCAGCGGTAT TACCGGCACGGTGGAGCGCATGACCATCCGTTCAATCGGTCTGCGGGACGACTACGGCGTGTATCACATAGTTCCCTTTT CTTCGATCACCACGCTGGCCAACTATGCCCGCGAATTTGGCGTCTACCGAGCCAATTACAGCGTTAGCCGCGACGAAGAC ATCGATCATGTCCATCAAGTGCTGCATCAGGCCGTTGATGCATTGAAACAAGACGATCAGGTGAAACATTTTCTGGTCGG CGAACCGGTATTCAACGGCGTGGTCGCGCTGGGTGACCGTTCCTTCACCACCCGGGTCACCGTTCGCACCCAGGCGTTGA AACAGTGGGTGGTGCAGTACGCGCTCGACCGCCTGGTAAAAATGCATTTTGACCAGGCCGATATCGCCATGCCACAACAG GCCATGCAGCTTTCTTATGCTCCGAACGCGGGAACGCCGCCGGAAACGTCCTGA
Upstream 100 bases:
>100_bases CGTTCCCACTCCCCGCCTCGTATCATTTCCTACTATATTGCTTGTTTTTATTAACATTTGTCTTTAATCCGCCGATTTAC AGAGCCCCAAGAGAGGATAA
Downstream 100 bases:
>100_bases CAATCATCACTGCGGCGTGCAGGGGTGGGCGGCAAGGAACGCCGCCACATCCTGCAGGTAAGCGTCATACTGTATCGATC GCGGCGCAAACAGGCCGACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 737; Mature: 736
Protein sequence:
>737_residues MPATAYSRLGSHLRERWFPLLLLLIACTVSPLAMAQSAQKTAPVDQSQQQKASYAALADILQDDKARAALIDHLRQAADQ SANSPPKTEASETPESLSDNLSNLAQGGISSVNQRLNSLQKLIDSGPKRSFNPDSFFRALGYFLLTVAVTFAIFHLIRRL IHPLYKRMGSWGHNAKLQQGPWYKLPTAILGAFAVDLLVLLLALAAGNLLARHVNADSATILRLQTLFLNAFAVIEFFKA ILRLIFSPNFDYLRPFPFSDASAHYWNQRLAWLSGLIGYGLMVVVPVVATQISYPAAAAANLIIMLALTLYAVALILRNR KPIQRQINLLAERSMAFFSIILRGLGHVWHLLAIAYFLVLFALSQFDIGNSLRFMMTATVKSLVVVGLGALLSGMLTRWI FRRISLPEDVNRRYPMLERRINSYIPNGLKILRVIVVLAVTLLLFDAWHLINLYQWAGSENGEKIIGGLVHILLIVVIAV FSWTLMASIIEHRLALELSNGIRPSARERTLLTLFRNVLAIVISTITIMIVLSQVGINIAPLLAGAGALGLAISFGAQTL VKDVITGVFIQFENGMNTGEYVTVSGITGTVERMTIRSIGLRDDYGVYHIVPFSSITTLANYAREFGVYRANYSVSRDED IDHVHQVLHQAVDALKQDDQVKHFLVGEPVFNGVVALGDRSFTTRVTVRTQALKQWVVQYALDRLVKMHFDQADIAMPQQ AMQLSYAPNAGTPPETS
Sequences:
>Translated_737_residues MPATAYSRLGSHLRERWFPLLLLLIACTVSPLAMAQSAQKTAPVDQSQQQKASYAALADILQDDKARAALIDHLRQAADQ SANSPPKTEASETPESLSDNLSNLAQGGISSVNQRLNSLQKLIDSGPKRSFNPDSFFRALGYFLLTVAVTFAIFHLIRRL IHPLYKRMGSWGHNAKLQQGPWYKLPTAILGAFAVDLLVLLLALAAGNLLARHVNADSATILRLQTLFLNAFAVIEFFKA ILRLIFSPNFDYLRPFPFSDASAHYWNQRLAWLSGLIGYGLMVVVPVVATQISYPAAAAANLIIMLALTLYAVALILRNR KPIQRQINLLAERSMAFFSIILRGLGHVWHLLAIAYFLVLFALSQFDIGNSLRFMMTATVKSLVVVGLGALLSGMLTRWI FRRISLPEDVNRRYPMLERRINSYIPNGLKILRVIVVLAVTLLLFDAWHLINLYQWAGSENGEKIIGGLVHILLIVVIAV FSWTLMASIIEHRLALELSNGIRPSARERTLLTLFRNVLAIVISTITIMIVLSQVGINIAPLLAGAGALGLAISFGAQTL VKDVITGVFIQFENGMNTGEYVTVSGITGTVERMTIRSIGLRDDYGVYHIVPFSSITTLANYAREFGVYRANYSVSRDED IDHVHQVLHQAVDALKQDDQVKHFLVGEPVFNGVVALGDRSFTTRVTVRTQALKQWVVQYALDRLVKMHFDQADIAMPQQ AMQLSYAPNAGTPPETS >Mature_736_residues PATAYSRLGSHLRERWFPLLLLLIACTVSPLAMAQSAQKTAPVDQSQQQKASYAALADILQDDKARAALIDHLRQAADQS ANSPPKTEASETPESLSDNLSNLAQGGISSVNQRLNSLQKLIDSGPKRSFNPDSFFRALGYFLLTVAVTFAIFHLIRRLI HPLYKRMGSWGHNAKLQQGPWYKLPTAILGAFAVDLLVLLLALAAGNLLARHVNADSATILRLQTLFLNAFAVIEFFKAI LRLIFSPNFDYLRPFPFSDASAHYWNQRLAWLSGLIGYGLMVVVPVVATQISYPAAAAANLIIMLALTLYAVALILRNRK PIQRQINLLAERSMAFFSIILRGLGHVWHLLAIAYFLVLFALSQFDIGNSLRFMMTATVKSLVVVGLGALLSGMLTRWIF RRISLPEDVNRRYPMLERRINSYIPNGLKILRVIVVLAVTLLLFDAWHLINLYQWAGSENGEKIIGGLVHILLIVVIAVF SWTLMASIIEHRLALELSNGIRPSARERTLLTLFRNVLAIVISTITIMIVLSQVGINIAPLLAGAGALGLAISFGAQTLV KDVITGVFIQFENGMNTGEYVTVSGITGTVERMTIRSIGLRDDYGVYHIVPFSSITTLANYAREFGVYRANYSVSRDEDI DHVHQVLHQAVDALKQDDQVKHFLVGEPVFNGVVALGDRSFTTRVTVRTQALKQWVVQYALDRLVKMHFDQADIAMPQQA MQLSYAPNAGTPPETS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mscS (TC 1.A.23) family [H]
Homologues:
Organism=Escherichia coli, GI87081787, Length=701, Percent_Identity=48.7874465049929, Blast_Score=648, Evalue=0.0, Organism=Escherichia coli, GI1789291, Length=211, Percent_Identity=29.3838862559242, Blast_Score=65, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010920 - InterPro: IPR011066 - InterPro: IPR006685 - InterPro: IPR011014 [H]
Pfam domain/function: PF00924 MS_channel [H]
EC number: NA
Molecular weight: Translated: 81622; Mature: 81490
Theoretical pI: Translated: 10.03; Mature: 10.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPATAYSRLGSHLRERWFPLLLLLIACTVSPLAMAQSAQKTAPVDQSQQQKASYAALADI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH LQDDKARAALIDHLRQAADQSANSPPKTEASETPESLSDNLSNLAQGGISSVNQRLNSLQ HHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH KLIDSGPKRSFNPDSFFRALGYFLLTVAVTFAIFHLIRRLIHPLYKRMGSWGHNAKLQQG HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC PWYKLPTAILGAFAVDLLVLLLALAAGNLLARHVNADSATILRLQTLFLNAFAVIEFFKA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH ILRLIFSPNFDYLRPFPFSDASAHYWNQRLAWLSGLIGYGLMVVVPVVATQISYPAAAAA HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH NLIIMLALTLYAVALILRNRKPIQRQINLLAERSMAFFSIILRGLGHVWHLLAIAYFLVL HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FALSQFDIGNSLRFMMTATVKSLVVVGLGALLSGMLTRWIFRRISLPEDVNRRYPMLERR HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHH INSYIPNGLKILRVIVVLAVTLLLFDAWHLINLYQWAGSENGEKIIGGLVHILLIVVIAV HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH FSWTLMASIIEHRLALELSNGIRPSARERTLLTLFRNVLAIVISTITIMIVLSQVGINIA HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH PLLAGAGALGLAISFGAQTLVKDVITGVFIQFENGMNTGEYVTVSGITGTVERMTIRSIG HHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEECCCHHHHHHHHHHCC LRDDYGVYHIVPFSSITTLANYAREFGVYRANYSVSRDEDIDHVHQVLHQAVDALKQDDQ CCCCCCEEEEECHHHHHHHHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCH VKHFLVGEPVFNGVVALGDRSFTTRVTVRTQALKQWVVQYALDRLVKMHFDQADIAMPQQ HHHHHCCCHHHCCHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHH AMQLSYAPNAGTPPETS HHHHCCCCCCCCCCCCC >Mature Secondary Structure PATAYSRLGSHLRERWFPLLLLLIACTVSPLAMAQSAQKTAPVDQSQQQKASYAALADI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH LQDDKARAALIDHLRQAADQSANSPPKTEASETPESLSDNLSNLAQGGISSVNQRLNSLQ HHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH KLIDSGPKRSFNPDSFFRALGYFLLTVAVTFAIFHLIRRLIHPLYKRMGSWGHNAKLQQG HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC PWYKLPTAILGAFAVDLLVLLLALAAGNLLARHVNADSATILRLQTLFLNAFAVIEFFKA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH ILRLIFSPNFDYLRPFPFSDASAHYWNQRLAWLSGLIGYGLMVVVPVVATQISYPAAAAA HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH NLIIMLALTLYAVALILRNRKPIQRQINLLAERSMAFFSIILRGLGHVWHLLAIAYFLVL HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FALSQFDIGNSLRFMMTATVKSLVVVGLGALLSGMLTRWIFRRISLPEDVNRRYPMLERR HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHH INSYIPNGLKILRVIVVLAVTLLLFDAWHLINLYQWAGSENGEKIIGGLVHILLIVVIAV HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH FSWTLMASIIEHRLALELSNGIRPSARERTLLTLFRNVLAIVISTITIMIVLSQVGINIA HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH PLLAGAGALGLAISFGAQTLVKDVITGVFIQFENGMNTGEYVTVSGITGTVERMTIRSIG HHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEECCCHHHHHHHHHHCC LRDDYGVYHIVPFSSITTLANYAREFGVYRANYSVSRDEDIDHVHQVLHQAVDALKQDDQ CCCCCCEEEEECHHHHHHHHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCH VKHFLVGEPVFNGVVALGDRSFTTRVTVRTQALKQWVVQYALDRLVKMHFDQADIAMPQQ HHHHHCCCHHHCCHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHH AMQLSYAPNAGTPPETS HHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]