| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is ybbP [H]
Identifier: 157369402
GI number: 157369402
Start: 1274423
End: 1276855
Strand: Direct
Name: ybbP [H]
Synonym: Spro_1159
Alternate gene names: 157369402
Gene position: 1274423-1276855 (Clockwise)
Preceding gene: 157369401
Following gene: 157369403
Centisome position: 23.39
GC content: 61.9
Gene sequence:
>2433_bases ATGATCTGGCGCTGGTTTTGGCGTGAGTGGCGTTCACCGTCACTGCTGATCGTCTGGCTGGCGCTGACGCTGTCGATGGC CTGCGTATTGGCATTGGGCAGTATCAGCGATCGTATGGACAAAGGTCTGAGCCAGCAGAGCCGCGATTTTATTGCCGGCG ATCGGGTACTGCGCAGCGCCCGGCCGGTGCCGGAAGGCTGGCTGCTGGACGCGCAACAACAGGGGCTGAAAGTCAGTCGA CAGTTGTCGTTCACCACCATGACCTATGCCGGCGATCGGCCCCAGTTGGCAGACGTGAAGGCCACCGATCTTGCCTATCC GCTGTACGGCAAGCTGGAGACCCGCCCGGCCAACGTTAAACTGACGCCGGGGAGCGTGCTGGTGGCGCCACGTTTGTTGG CGTTGTTGAACGTGAAGGTCGGTGACAGGCTGGACGTGGGCGATACCAGCCTGCGCATTGCCGGTGAAATTATTCAGGAG CCGGATTCCGGCTTTAACCCTTTCCAGACGGCACCGCGCATCATGATCAATCTGGCGGACGTGGACAAAACCGGGGCGGT GCAGCCGGGCAGCCGTCTGACCTACCGTTATATGTTTGCCGGGGCTGCGGAGGATATCCAGCGTTATGAAGATCGCCTGA CGCCACAGCTTGGCCCCGATCAGCGCTGGTTTGGCTTGCAGGAGTCCGGTAGTGCATTGGGTAAATCGTTGCAACGCTCG CAGCAGTTCCTGTTGCTGTCGGCGCTGCTGACCTTGCTGCTGTCGATTGCCGCCGTCGCGGTGGCGATGAGCCATTATTG CCGCAGCCGTTATGACTTGATCGCGGTGTTGAAAACTCTGGGGGCCGGCCGCAGCGCATTGCGTAAGTTGATTATCGGCC AGTGGCTGGCTGTAATTCTGCTGGCCGCCGTCGGAGGGGGCATTATCGGGCTGGGGTTTGAAGCGCTGCTGATCCGCCTG CTGGCACCGGTGCTGCCGGCGGAACTGCCAGCCGCCGGGGCCTGGCCGTGGCTGTGGGCGGTCGGCGCATTGCTGATGAT TTCTCTGTTGGTGGGGCTGCGGCCGTACCGGCAGTTACTGGCGACCCAGCCGCTGCGGGTGCTGCGCCGCGATGTGGTGG CCAACGTCTGGCCGCTGCGTTATTTCCTGCCGCTAACGGCGGTGATTGTGGTGGCGCTGTTGACGGCATTGATGGGGGCC AGCACGCTACTGTGGTCGATCCTCGCCGGTATTCTGGTGCTGGCGCTGCTGTTGGGCGCTATCGGCTGGGGCAGCCTGTT ATTGCTGCGACGCATTACGCTGAAGAATCTGGCACTGCGACTGGCGGTTAACCGTCTGTTGCATCAACCCTGGGTCACGG TCAGCCAACTGGCGGCTTTCTCGCTGTCGTTTATGTTGCTGGCGTTACTGCTGGTGCTGCGTGGCGATCTGCTTGAGCGT TGGCAGCAGCAACTGCCACCGGACAGCCCGAATTACTTCCTGCTGAACATGACTGAGGCGCAGGTGCCACAGGTGAAAAC CTTCCTGCAACAGCATCAAGTTAAACCGGAAACCTACTATCCCATTGTCCGCGTGCGCCTGACCGAGATTAACCAGCAGG TGGCGACCGAACGGGTGCATGAGGACGATCCGGGCGGCGAGGCGGTGAATCGTGAGCTGAACCTGACTTGGCTGGCAGAG CTGCCGGCGCACAATCCATTGCTGGCAGGCAGTTGGCCGCCGAAAGCCGGCGAGGTGTCGATGGATCAGGGCATTGCCGG ACGACTCAAGATCAAACTGGGCGATACGCTGACCTTCAGCGGCGATACCCAGTCGTTCAGCGCCAGGGTCACCAGCCTGC GCCAGGTGGATTGGGAAAGCCTGAAACCGAACTTTTACTTCATCTTCCCGCCGGGTGCGCTGGACGGTCAGCCGCAAACC TGGCTCACCAGTTTCCGTTACGACGGGGACGGGCAGATGCTGACCCAGCTTAATCGCCAGTTCCCGACGCTCAGCCTGCT GGATATAGGTTCGATCCTCAAACAGGTGGGCGGTGTGCTGCAGCAGGTGAGCCGCGCGCTGGAAGTGATGGTGGTGCTGG TGGTGCTCTGCGGCGGTTTGTTGCTGATGGCGCAGGTGCAGGTGGGTATGCGTCAGCGGCGTCAGGAACTGGTGGTGTAC CGTACGCTCGGCGCCGGCAAGCGCCTGTTGCGCAGCACGCTGTGGTGTGAGTTTGCCCTGTTGGGGCTGGTGGCGGGCAT TGCCGCCGCGGTGGGGGCAGAAGCGGCACTGTGGTTGCTGCAAAGCCAGGTATTTGACTTCCCATGGGCGCCAACACCGG TGCTGTGGTGGGCACTGCCGCTACTCAGTGCGTTGTTGCTGTCGCTGTGCGGTGGTTGGCTGGGCGTGCGCTTGCTGCGC GGGCAGGCGCTGTTCCGCAGTTACGACGGTTAA
Upstream 100 bases:
>100_bases ATTTCGCCACTACGTTAATCCTGGTCACCCATGACGAAACCCTGGCGGCTCGCTGCCAGCGTCGGCTGCGCCTGCGTGAA GGCCAGCTGTGGGAGGAAGC
Downstream 100 bases:
>100_bases CTCACATATCAAGCTGGCCCAGGTTACCGGGCCAGCCGAACAACGATCGCTATTTCCCTCTTATCTGACCTTCGCTTCCC CCCAATCACCAGTCTTTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 810; Mature: 810
Protein sequence:
>810_residues MIWRWFWREWRSPSLLIVWLALTLSMACVLALGSISDRMDKGLSQQSRDFIAGDRVLRSARPVPEGWLLDAQQQGLKVSR QLSFTTMTYAGDRPQLADVKATDLAYPLYGKLETRPANVKLTPGSVLVAPRLLALLNVKVGDRLDVGDTSLRIAGEIIQE PDSGFNPFQTAPRIMINLADVDKTGAVQPGSRLTYRYMFAGAAEDIQRYEDRLTPQLGPDQRWFGLQESGSALGKSLQRS QQFLLLSALLTLLLSIAAVAVAMSHYCRSRYDLIAVLKTLGAGRSALRKLIIGQWLAVILLAAVGGGIIGLGFEALLIRL LAPVLPAELPAAGAWPWLWAVGALLMISLLVGLRPYRQLLATQPLRVLRRDVVANVWPLRYFLPLTAVIVVALLTALMGA STLLWSILAGILVLALLLGAIGWGSLLLLRRITLKNLALRLAVNRLLHQPWVTVSQLAAFSLSFMLLALLLVLRGDLLER WQQQLPPDSPNYFLLNMTEAQVPQVKTFLQQHQVKPETYYPIVRVRLTEINQQVATERVHEDDPGGEAVNRELNLTWLAE LPAHNPLLAGSWPPKAGEVSMDQGIAGRLKIKLGDTLTFSGDTQSFSARVTSLRQVDWESLKPNFYFIFPPGALDGQPQT WLTSFRYDGDGQMLTQLNRQFPTLSLLDIGSILKQVGGVLQQVSRALEVMVVLVVLCGGLLLMAQVQVGMRQRRQELVVY RTLGAGKRLLRSTLWCEFALLGLVAGIAAAVGAEAALWLLQSQVFDFPWAPTPVLWWALPLLSALLLSLCGGWLGVRLLR GQALFRSYDG
Sequences:
>Translated_810_residues MIWRWFWREWRSPSLLIVWLALTLSMACVLALGSISDRMDKGLSQQSRDFIAGDRVLRSARPVPEGWLLDAQQQGLKVSR QLSFTTMTYAGDRPQLADVKATDLAYPLYGKLETRPANVKLTPGSVLVAPRLLALLNVKVGDRLDVGDTSLRIAGEIIQE PDSGFNPFQTAPRIMINLADVDKTGAVQPGSRLTYRYMFAGAAEDIQRYEDRLTPQLGPDQRWFGLQESGSALGKSLQRS QQFLLLSALLTLLLSIAAVAVAMSHYCRSRYDLIAVLKTLGAGRSALRKLIIGQWLAVILLAAVGGGIIGLGFEALLIRL LAPVLPAELPAAGAWPWLWAVGALLMISLLVGLRPYRQLLATQPLRVLRRDVVANVWPLRYFLPLTAVIVVALLTALMGA STLLWSILAGILVLALLLGAIGWGSLLLLRRITLKNLALRLAVNRLLHQPWVTVSQLAAFSLSFMLLALLLVLRGDLLER WQQQLPPDSPNYFLLNMTEAQVPQVKTFLQQHQVKPETYYPIVRVRLTEINQQVATERVHEDDPGGEAVNRELNLTWLAE LPAHNPLLAGSWPPKAGEVSMDQGIAGRLKIKLGDTLTFSGDTQSFSARVTSLRQVDWESLKPNFYFIFPPGALDGQPQT WLTSFRYDGDGQMLTQLNRQFPTLSLLDIGSILKQVGGVLQQVSRALEVMVVLVVLCGGLLLMAQVQVGMRQRRQELVVY RTLGAGKRLLRSTLWCEFALLGLVAGIAAAVGAEAALWLLQSQVFDFPWAPTPVLWWALPLLSALLLSLCGGWLGVRLLR GQALFRSYDG >Mature_810_residues MIWRWFWREWRSPSLLIVWLALTLSMACVLALGSISDRMDKGLSQQSRDFIAGDRVLRSARPVPEGWLLDAQQQGLKVSR QLSFTTMTYAGDRPQLADVKATDLAYPLYGKLETRPANVKLTPGSVLVAPRLLALLNVKVGDRLDVGDTSLRIAGEIIQE PDSGFNPFQTAPRIMINLADVDKTGAVQPGSRLTYRYMFAGAAEDIQRYEDRLTPQLGPDQRWFGLQESGSALGKSLQRS QQFLLLSALLTLLLSIAAVAVAMSHYCRSRYDLIAVLKTLGAGRSALRKLIIGQWLAVILLAAVGGGIIGLGFEALLIRL LAPVLPAELPAAGAWPWLWAVGALLMISLLVGLRPYRQLLATQPLRVLRRDVVANVWPLRYFLPLTAVIVVALLTALMGA STLLWSILAGILVLALLLGAIGWGSLLLLRRITLKNLALRLAVNRLLHQPWVTVSQLAAFSLSFMLLALLLVLRGDLLER WQQQLPPDSPNYFLLNMTEAQVPQVKTFLQQHQVKPETYYPIVRVRLTEINQQVATERVHEDDPGGEAVNRELNLTWLAE LPAHNPLLAGSWPPKAGEVSMDQGIAGRLKIKLGDTLTFSGDTQSFSARVTSLRQVDWESLKPNFYFIFPPGALDGQPQT WLTSFRYDGDGQMLTQLNRQFPTLSLLDIGSILKQVGGVLQQVSRALEVMVVLVVLCGGLLLMAQVQVGMRQRRQELVVY RTLGAGKRLLRSTLWCEFALLGLVAGIAAAVGAEAALWLLQSQVFDFPWAPTPVLWWALPLLSALLLSLCGGWLGVRLLR GQALFRSYDG
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=810, Percent_Identity=70.4938271604938, Blast_Score=1071, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 89454; Mature: 89454
Theoretical pI: Translated: 10.12; Mature: 10.12
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIWRWFWREWRSPSLLIVWLALTLSMACVLALGSISDRMDKGLSQQSRDFIAGDRVLRSA CCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC RPVPEGWLLDAQQQGLKVSRQLSFTTMTYAGDRPQLADVKATDLAYPLYGKLETRPANVK CCCCCCCEECCHHHCCHHHHHEEEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCEE LTPGSVLVAPRLLALLNVKVGDRLDVGDTSLRIAGEIIQEPDSGFNPFQTAPRIMINLAD ECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHCCCHHEEEEEC VDKTGAVQPGSRLTYRYMFAGAAEDIQRYEDRLTPQLGPDQRWFGLQESGSALGKSLQRS CCCCCCCCCCCCCEEHHHHHCCHHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHHHHH QQFLLLSALLTLLLSIAAVAVAMSHYCRSRYDLIAVLKTLGAGRSALRKLIIGQWLAVIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH LAAVGGGIIGLGFEALLIRLLAPVLPAELPAAGAWPWLWAVGALLMISLLVGLRPYRQLL HHHHCCCHHHHCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH ATQPLRVLRRDVVANVWPLRYFLPLTAVIVVALLTALMGASTLLWSILAGILVLALLLGA HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGWGSLLLLRRITLKNLALRLAVNRLLHQPWVTVSQLAAFSLSFMLLALLLVLRGDLLER HCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WQQQLPPDSPNYFLLNMTEAQVPQVKTFLQQHQVKPETYYPIVRVRLTEINQQVATERVH HHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHC EDDPGGEAVNRELNLTWLAELPAHNPLLAGSWPPKAGEVSMDQGIAGRLKIKLGDTLTFS CCCCCCHHHCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEECCEEEEC GDTQSFSARVTSLRQVDWESLKPNFYFIFPPGALDGQPQTWLTSFRYDGDGQMLTQLNRQ CCCHHHHHHHHHHHHCCHHHCCCCEEEEECCCCCCCCCHHHHHHEEECCCCHHHHHHHHC FPTLSLLDIGSILKQVGGVLQQVSRALEVMVVLVVLCGGLLLMAQVQVGMRQRRQELVVY CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RTLGAGKRLLRSTLWCEFALLGLVAGIAAAVGAEAALWLLQSQVFDFPWAPTPVLWWALP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH LLSALLLSLCGGWLGVRLLRGQALFRSYDG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MIWRWFWREWRSPSLLIVWLALTLSMACVLALGSISDRMDKGLSQQSRDFIAGDRVLRSA CCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC RPVPEGWLLDAQQQGLKVSRQLSFTTMTYAGDRPQLADVKATDLAYPLYGKLETRPANVK CCCCCCCEECCHHHCCHHHHHEEEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCEE LTPGSVLVAPRLLALLNVKVGDRLDVGDTSLRIAGEIIQEPDSGFNPFQTAPRIMINLAD ECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHCCCHHEEEEEC VDKTGAVQPGSRLTYRYMFAGAAEDIQRYEDRLTPQLGPDQRWFGLQESGSALGKSLQRS CCCCCCCCCCCCCEEHHHHHCCHHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHHHHH QQFLLLSALLTLLLSIAAVAVAMSHYCRSRYDLIAVLKTLGAGRSALRKLIIGQWLAVIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH LAAVGGGIIGLGFEALLIRLLAPVLPAELPAAGAWPWLWAVGALLMISLLVGLRPYRQLL HHHHCCCHHHHCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH ATQPLRVLRRDVVANVWPLRYFLPLTAVIVVALLTALMGASTLLWSILAGILVLALLLGA HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGWGSLLLLRRITLKNLALRLAVNRLLHQPWVTVSQLAAFSLSFMLLALLLVLRGDLLER HCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WQQQLPPDSPNYFLLNMTEAQVPQVKTFLQQHQVKPETYYPIVRVRLTEINQQVATERVH HHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHC EDDPGGEAVNRELNLTWLAELPAHNPLLAGSWPPKAGEVSMDQGIAGRLKIKLGDTLTFS CCCCCCHHHCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEECCEEEEC GDTQSFSARVTSLRQVDWESLKPNFYFIFPPGALDGQPQTWLTSFRYDGDGQMLTQLNRQ CCCHHHHHHHHHHHHCCHHHCCCCEEEEECCCCCCCCCHHHHHHEEECCCCHHHHHHHHC FPTLSLLDIGSILKQVGGVLQQVSRALEVMVVLVVLCGGLLLMAQVQVGMRQRRQELVVY CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RTLGAGKRLLRSTLWCEFALLGLVAGIAAAVGAEAALWLLQSQVFDFPWAPTPVLWWALP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH LLSALLLSLCGGWLGVRLLRGQALFRSYDG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]