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The map label for this gene is ybaO [H]

Identifier: 157369349

GI number: 157369349

Start: 1217569

End: 1218030

Strand: Direct

Name: ybaO [H]

Synonym: Spro_1106

Alternate gene names: 157369349

Gene position: 1217569-1218030 (Clockwise)

Preceding gene: 157369347

Following gene: 157369350

Centisome position: 22.35

GC content: 54.11

Gene sequence:

>462_bases
ATGTTAGATAAAACAGACCGTAAATTACTGTGCATGCTGCAGCAGGACTGTACGCAACCGCTGCAGGTGTTGGCCGACGC
GGTCAATCTGACGTCAACACCCTGCTGGAAAAGGCTCAAGCGGCTGGAAGAAGAAGGTTATATCCGTGGGCGAGTCGCGC
TGCTGGATAACGAAAAACTCGGCCTGGGCCTGACGGCATTTGTGCTGATCAAAACTCAGCAGCACAGCAGCGAGTGGTAT
CAACAGTTCGTGCAACTGACCAAGCAGATGCCGGAGGTGCTGGCCTTCTATCGCATGGCGGGAGAGTACGATTACCTGAT
GCAGGTGGAAGTGGCGGATATGAAGAGTTACGACAGTTTCTACAAGCGCCTGGTGAACGGCGTGCCGGGGCTGATCGACG
TCACTTCCAGCTTCGCGATGGAAAAAATCAAATACACCACCGCACTGCCGGTTCCTGAGTGA

Upstream 100 bases:

>100_bases
CTTGTTTGTTGCATAATATAGCCTGCCACGAGGAAAAAAGGATTGCCATTTTTCCTGTTTAATCGCCTAATGAGAGAAAA
TTATTCTCCTGGTTGACGAT

Downstream 100 bases:

>100_bases
AAAGTTCACCAAATTGGCAAAGTAACGGTGGTATCCTACTCTGCTGAGGCAGAACGAGAGAAAAAACCATTACATCCTGG
AATAAAACTGCGTGAGACTA

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MLDKTDRKLLCMLQQDCTQPLQVLADAVNLTSTPCWKRLKRLEEEGYIRGRVALLDNEKLGLGLTAFVLIKTQQHSSEWY
QQFVQLTKQMPEVLAFYRMAGEYDYLMQVEVADMKSYDSFYKRLVNGVPGLIDVTSSFAMEKIKYTTALPVPE

Sequences:

>Translated_153_residues
MLDKTDRKLLCMLQQDCTQPLQVLADAVNLTSTPCWKRLKRLEEEGYIRGRVALLDNEKLGLGLTAFVLIKTQQHSSEWY
QQFVQLTKQMPEVLAFYRMAGEYDYLMQVEVADMKSYDSFYKRLVNGVPGLIDVTSSFAMEKIKYTTALPVPE
>Mature_153_residues
MLDKTDRKLLCMLQQDCTQPLQVLADAVNLTSTPCWKRLKRLEEEGYIRGRVALLDNEKLGLGLTAFVLIKTQQHSSEWY
QQFVQLTKQMPEVLAFYRMAGEYDYLMQVEVADMKSYDSFYKRLVNGVPGLIDVTSSFAMEKIKYTTALPVPE

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=76.8211920529801, Blast_Score=247, Evalue=3e-67,
Organism=Escherichia coli, GI1787116, Length=150, Percent_Identity=31.3333333333333, Blast_Score=91, Evalue=3e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17640; Mature: 17640

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDKTDRKLLCMLQQDCTQPLQVLADAVNLTSTPCWKRLKRLEEEGYIRGRVALLDNEKL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCC
GLGLTAFVLIKTQQHSSEWYQQFVQLTKQMPEVLAFYRMAGEYDYLMQVEVADMKSYDSF
CCCCEEHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEHHHHHHHHHH
YKRLVNGVPGLIDVTSSFAMEKIKYTTALPVPE
HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLDKTDRKLLCMLQQDCTQPLQVLADAVNLTSTPCWKRLKRLEEEGYIRGRVALLDNEKL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCC
GLGLTAFVLIKTQQHSSEWYQQFVQLTKQMPEVLAFYRMAGEYDYLMQVEVADMKSYDSF
CCCCEEHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEHHHHHHHHHH
YKRLVNGVPGLIDVTSSFAMEKIKYTTALPVPE
HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]