| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is bioA [C]
Identifier: 157368852
GI number: 157368852
Start: 673317
End: 674657
Strand: Reverse
Name: bioA [C]
Synonym: Spro_0607
Alternate gene names: 157368852
Gene position: 674657-673317 (Counterclockwise)
Preceding gene: 157368856
Following gene: 157368851
Centisome position: 12.38
GC content: 57.64
Gene sequence:
>1341_bases ATGGCTGATTTAAATCACCCTGAAAATAAACCCGAACCTGAATGGTTAGAAGCCCATTGGATGCCGTTTACCGGTAACCG TAATTTTAAAGCCAACCCGCGAATGATAAGCCATGCTGAAGGCGTTTATTATACCAGCCAGGACGGCCGCAAAATTTTTG ACGGTTTATCCGGGTTATGGTGCTGCGGATTAGGTCACGGCCGTCAGGAAATTGCCGAGGCGGCCTACCGACAACTCTCT CGGCTGGATTATTCTCCGGCGTTTCAGTTTGGCCATGCATTATCTTTCGAACTGGCCAACAAGATTAAGACCATGACGCC TGCCGGGCTGGACTATGTGTTTTTCACCGGCTCCGGCTCCGAAGCCGCAGACACCTCGTTAAAAATGGCCCGTGCCTACT GGCGCGCCAAGGGGCAGGCGGGCAAGACCTGCTTTATCGGCCGCGAAAAGGGTTACCACGGCGTTAACTTCGGTGGTATT GCGGTGGGCGGCATCGCCGGCAACCGAAAAGCCTTTGGTGCCAGCGCCGAAGCGGATCATCTGCCGCATACCCTGCTGGC AGGTAACGCCTTTTCACGCGGTATGCCCGAACAGGGCGCAGAACTGGCGGAAGAGCTGAACCGCATCATTACGCTACGTG ACGCCTCAACCATCGCCGCGGTGATTATTGAGCCGTTCTCCGGCTCCGCCGGGGTGATTGTGCCACCGGTCGGTTATCTG CAACGCATCCGCGAGATCTGCACTCAACACAATATCCTGCTGATTTTTGACGAAGTGATCACCGCCTTCGGTCGCTGCGG TGCCCTGACCGGGGCCGAAGCCTTCGGCGTCACTCCGGACATCATGAATATCGCCAAACAGGTGACCAACGGCGCCCAGC CGATGGGCGCGGTGGTAGTTCGGCCAGAGATTTACCAGGCCTTTATGACCACCGATGAACCCGAGTATTTGCTTGAGTTC CCGCACGGCTACACCTATTCCGCCCACCCGGTCAGCTGTGCGGTAGGGCTGGCGACGCTGGATATCATTGAGCGCGAGCA GATGATTGAACGGGTGCAGGCACTTGCACCCTATTTCGAGCAGGCGGTGCACGGTTTACAGGGTTGCCGTCACGTCACCG ACATTCGCAACTTTGGTCTGGCAGCCGGCATCACGCTGGCGGCACGACCGGGGGAAGCGGCACGCAGGCCGTATGAGGTG GCGATGCGCTGCTGGGAAAAAGGCTTTTATGTTCGCTACGGCGGCGACACCCTGCAGCTGGCACCGCCGTTTATCAGCAG CGAGGCGCAGATCGATTCGTTGATCAACGCCCTGGGCGACGCCATCAACGCAACAGAATAA
Upstream 100 bases:
>100_bases ATTCACATTAGTGAAGAAGCGGAACATAGTCAATTTGAAGCAACAATTCATTAACACGTCAGATTATTAACCCTACCTAT TCTCCCGCCCGGAGGGAAAC
Downstream 100 bases:
>100_bases TCAGGAGCGAATGCCATGCCTATTGCACATTGGATCAACGGCCAGTCCGCCACCGGCGGCAGCCGCAGCCAGCCGGTATT CGATCCGGCGACCGGGCAGT
Product: beta alanine--pyruvate transaminase
Products: NA
Alternate protein names: Omega-APT; Beta-alanine--pyruvate aminotransferase [H]
Number of amino acids: Translated: 446; Mature: 445
Protein sequence:
>446_residues MADLNHPENKPEPEWLEAHWMPFTGNRNFKANPRMISHAEGVYYTSQDGRKIFDGLSGLWCCGLGHGRQEIAEAAYRQLS RLDYSPAFQFGHALSFELANKIKTMTPAGLDYVFFTGSGSEAADTSLKMARAYWRAKGQAGKTCFIGREKGYHGVNFGGI AVGGIAGNRKAFGASAEADHLPHTLLAGNAFSRGMPEQGAELAEELNRIITLRDASTIAAVIIEPFSGSAGVIVPPVGYL QRIREICTQHNILLIFDEVITAFGRCGALTGAEAFGVTPDIMNIAKQVTNGAQPMGAVVVRPEIYQAFMTTDEPEYLLEF PHGYTYSAHPVSCAVGLATLDIIEREQMIERVQALAPYFEQAVHGLQGCRHVTDIRNFGLAAGITLAARPGEAARRPYEV AMRCWEKGFYVRYGGDTLQLAPPFISSEAQIDSLINALGDAINATE
Sequences:
>Translated_446_residues MADLNHPENKPEPEWLEAHWMPFTGNRNFKANPRMISHAEGVYYTSQDGRKIFDGLSGLWCCGLGHGRQEIAEAAYRQLS RLDYSPAFQFGHALSFELANKIKTMTPAGLDYVFFTGSGSEAADTSLKMARAYWRAKGQAGKTCFIGREKGYHGVNFGGI AVGGIAGNRKAFGASAEADHLPHTLLAGNAFSRGMPEQGAELAEELNRIITLRDASTIAAVIIEPFSGSAGVIVPPVGYL QRIREICTQHNILLIFDEVITAFGRCGALTGAEAFGVTPDIMNIAKQVTNGAQPMGAVVVRPEIYQAFMTTDEPEYLLEF PHGYTYSAHPVSCAVGLATLDIIEREQMIERVQALAPYFEQAVHGLQGCRHVTDIRNFGLAAGITLAARPGEAARRPYEV AMRCWEKGFYVRYGGDTLQLAPPFISSEAQIDSLINALGDAINATE >Mature_445_residues ADLNHPENKPEPEWLEAHWMPFTGNRNFKANPRMISHAEGVYYTSQDGRKIFDGLSGLWCCGLGHGRQEIAEAAYRQLSR LDYSPAFQFGHALSFELANKIKTMTPAGLDYVFFTGSGSEAADTSLKMARAYWRAKGQAGKTCFIGREKGYHGVNFGGIA VGGIAGNRKAFGASAEADHLPHTLLAGNAFSRGMPEQGAELAEELNRIITLRDASTIAAVIIEPFSGSAGVIVPPVGYLQ RIREICTQHNILLIFDEVITAFGRCGALTGAEAFGVTPDIMNIAKQVTNGAQPMGAVVVRPEIYQAFMTTDEPEYLLEFP HGYTYSAHPVSCAVGLATLDIIEREQMIERVQALAPYFEQAVHGLQGCRHVTDIRNFGLAAGITLAARPGEAARRPYEVA MRCWEKGFYVRYGGDTLQLAPPFISSEAQIDSLINALGDAINATE
Specific function: Catalyzes transamination between a variety of omega- amino acids, mono and diamines, and pyruvate. Plays a pivotal role in the metabolism of the omega amino acids [H]
COG id: COG0161
COG function: function code H; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI4557809, Length=424, Percent_Identity=26.6509433962264, Blast_Score=136, Evalue=5e-32, Organism=Homo sapiens, GI37574042, Length=435, Percent_Identity=28.0459770114943, Blast_Score=131, Evalue=1e-30, Organism=Homo sapiens, GI226442705, Length=435, Percent_Identity=28.0459770114943, Blast_Score=128, Evalue=1e-29, Organism=Homo sapiens, GI13994255, Length=439, Percent_Identity=24.8291571753986, Blast_Score=124, Evalue=2e-28, Organism=Homo sapiens, GI226442709, Length=400, Percent_Identity=28.75, Blast_Score=124, Evalue=2e-28, Organism=Homo sapiens, GI24119277, Length=446, Percent_Identity=25.5605381165919, Blast_Score=117, Evalue=2e-26, Organism=Homo sapiens, GI284507298, Length=329, Percent_Identity=27.355623100304, Blast_Score=114, Evalue=2e-25, Organism=Escherichia coli, GI1786991, Length=427, Percent_Identity=29.7423887587822, Blast_Score=161, Evalue=7e-41, Organism=Escherichia coli, GI145693181, Length=301, Percent_Identity=31.5614617940199, Blast_Score=142, Evalue=3e-35, Organism=Escherichia coli, GI1789759, Length=406, Percent_Identity=29.3103448275862, Blast_Score=138, Evalue=7e-34, Organism=Escherichia coli, GI1788044, Length=407, Percent_Identity=28.5012285012285, Blast_Score=137, Evalue=1e-33, Organism=Escherichia coli, GI1789016, Length=410, Percent_Identity=26.3414634146341, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1787560, Length=436, Percent_Identity=25.6880733944954, Blast_Score=105, Evalue=6e-24, Organism=Escherichia coli, GI1786349, Length=350, Percent_Identity=27.4285714285714, Blast_Score=86, Evalue=5e-18, Organism=Caenorhabditis elegans, GI32564660, Length=447, Percent_Identity=26.1744966442953, Blast_Score=133, Evalue=2e-31, Organism=Caenorhabditis elegans, GI25144271, Length=425, Percent_Identity=24.9411764705882, Blast_Score=129, Evalue=4e-30, Organism=Caenorhabditis elegans, GI71992977, Length=440, Percent_Identity=25.6818181818182, Blast_Score=115, Evalue=4e-26, Organism=Caenorhabditis elegans, GI25144274, Length=242, Percent_Identity=27.6859504132231, Blast_Score=106, Evalue=2e-23, Organism=Saccharomyces cerevisiae, GI6323470, Length=436, Percent_Identity=24.7706422018349, Blast_Score=145, Evalue=9e-36, Organism=Saccharomyces cerevisiae, GI6324432, Length=412, Percent_Identity=25.9708737864078, Blast_Score=123, Evalue=5e-29, Organism=Saccharomyces cerevisiae, GI6324386, Length=433, Percent_Identity=24.4803695150115, Blast_Score=121, Evalue=2e-28, Organism=Drosophila melanogaster, GI21357415, Length=424, Percent_Identity=26.6509433962264, Blast_Score=140, Evalue=1e-33, Organism=Drosophila melanogaster, GI21356575, Length=369, Percent_Identity=29.5392953929539, Blast_Score=129, Evalue=3e-30, Organism=Drosophila melanogaster, GI28574759, Length=446, Percent_Identity=26.6816143497758, Blast_Score=123, Evalue=2e-28, Organism=Drosophila melanogaster, GI161085790, Length=444, Percent_Identity=26.1261261261261, Blast_Score=120, Evalue=2e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005814 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00202 Aminotran_3 [H]
EC number: =2.6.1.18 [H]
Molecular weight: Translated: 48526; Mature: 48394
Theoretical pI: Translated: 6.05; Mature: 6.05
Prosite motif: PS00600 AA_TRANSFER_CLASS_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADLNHPENKPEPEWLEAHWMPFTGNRNFKANPRMISHAEGVYYTSQDGRKIFDGLSGLW CCCCCCCCCCCCCCHHHEECEEECCCCCCCCCCCEEECCCCEEEECCCCHHHHHCCCCEE CCGLGHGRQEIAEAAYRQLSRLDYSPAFQFGHALSFELANKIKTMTPAGLDYVFFTGSGS EECCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCC EAADTSLKMARAYWRAKGQAGKTCFIGREKGYHGVNFGGIAVGGIAGNRKAFGASAEADH CHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC LPHTLLAGNAFSRGMPEQGAELAEELNRIITLRDASTIAAVIIEPFSGSAGVIVPPVGYL CCCHHHCCCHHHCCCCHHHHHHHHHHHHEEEECCCCEEEEEEEECCCCCCCEEECCHHHH QRIREICTQHNILLIFDEVITAFGRCGALTGAEAFGVTPDIMNIAKQVTNGAQPMGAVVV HHHHHHHHCCCEEEEHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHHHCCCCCCCEEEE RPEIYQAFMTTDEPEYLLEFPHGYTYSAHPVSCAVGLATLDIIEREQMIERVQALAPYFE CHHHHHHHHCCCCCHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QAVHGLQGCRHVTDIRNFGLAAGITLAARPGEAARRPYEVAMRCWEKGFYVRYGGDTLQL HHHHHHHHHHHHHHHHHCCHHHCEEEEECCCHHHCCHHHHHHHHHHCCCEEEECCCEEEE APPFISSEAQIDSLINALGDAINATE CCCCCCCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure ADLNHPENKPEPEWLEAHWMPFTGNRNFKANPRMISHAEGVYYTSQDGRKIFDGLSGLW CCCCCCCCCCCCCHHHEECEEECCCCCCCCCCCEEECCCCEEEECCCCHHHHHCCCCEE CCGLGHGRQEIAEAAYRQLSRLDYSPAFQFGHALSFELANKIKTMTPAGLDYVFFTGSGS EECCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCC EAADTSLKMARAYWRAKGQAGKTCFIGREKGYHGVNFGGIAVGGIAGNRKAFGASAEADH CHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC LPHTLLAGNAFSRGMPEQGAELAEELNRIITLRDASTIAAVIIEPFSGSAGVIVPPVGYL CCCHHHCCCHHHCCCCHHHHHHHHHHHHEEEECCCCEEEEEEEECCCCCCCEEECCHHHH QRIREICTQHNILLIFDEVITAFGRCGALTGAEAFGVTPDIMNIAKQVTNGAQPMGAVVV HHHHHHHHCCCEEEEHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHHHCCCCCCCEEEE RPEIYQAFMTTDEPEYLLEFPHGYTYSAHPVSCAVGLATLDIIEREQMIERVQALAPYFE CHHHHHHHHCCCCCHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QAVHGLQGCRHVTDIRNFGLAAGITLAARPGEAARRPYEVAMRCWEKGFYVRYGGDTLQL HHHHHHHHHHHHHHHHHCCHHHCEEEEECCCHHHCCHHHHHHHHHHCCCEEEECCCEEEE APPFISSEAQIDSLINALGDAINATE CCCCCCCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1618757; 6822556; 2500426 [H]