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The map label for this gene is yvrC [H]

Identifier: 157368792

GI number: 157368792

Start: 605298

End: 606254

Strand: Reverse

Name: yvrC [H]

Synonym: Spro_0547

Alternate gene names: 157368792

Gene position: 606254-605298 (Counterclockwise)

Preceding gene: 157368793

Following gene: 157368791

Centisome position: 11.13

GC content: 53.4

Gene sequence:

>957_bases
GTGAAAAAGTTAATCCTCGCCGCCTTACTGGCATTAGCCTCAGAAAGCGTCGCAGCCTCTGGTTTTCCTGTCACCGTAGA
CAACTGCGGCCAGCCACTGACCTTTGTCCAGGCCCCGCAGCGGGCGGTTATCCAGGACATTAATATGTCGCAAATGGCAT
TTGCCCTGCAGCTACAGCCTGCCATGGTTGGCGTGACCGGTATCTCCGGCTGGTATAAAAATATCCCTGAGTTTACGCAA
CAGCGGGGAACCATCCCTGAGCTGGCACCGAAATACCCGACTGTCGAAAATCTTCTCGCCGTTAATCCTGACCTGTTTTT
CGCTGGCTGGAACTATGGCCTGCGGGGTGACGTCACCCCGCAGGCGCTGGCGAAATTTAATATCAAAACGCTGATACTGA
GCGAAAGCTGCATCCACATAGACAGTCATCGCCCACGCGCCAGCCTGGATTTGTTGTACGGCGACATGATTAGGCTCGGC
AAAGTCTTCGGCAAACAGGAACAGGCGGAAACGCTGGTCAGTGTCTGGAAGCAGCAAGTGACCGATATCCATCGAAAAAT
TGCGACGCAAAAGCCGATAAAGGTGTTTCTTTATGATTCCGGCGAAGACAAGCCCTACACCAGCGGGGCTTACGCGATGC
CGACGGCAATTATTGAAGCCGCCGGGGCGAAGAATGTGATGGATAGCCTGAACACCAGTTGGGCAACCACCAACTGGGAA
AGTGTCGCGGCGGCAGAGCCTGAATTTATCATTCTGGTGGATTACCAGGCAGAGACGACCGACGATACCGACCAAAGGCA
GCTTTTCCTTGAACAGCACCCATTGATGAAACACACCCGGGCAGTGCTCCATCATCGTTATTTGAAATTGAAATATCAGG
AGCTGACGCCGGGGCCGGTCAATATTGATGCCATCCAAAAACTGGCGCACGCCCTTTACCCCGCAGCCTTTACCTAA

Upstream 100 bases:

>100_bases
GTTTGATCTAACTACATTTGTCATACGAATTATTCAGGTATGTTGCCCCGGTTCCCAATGAGCCGGGTTACTGACTCCGG
TTTATCAATCTGGAGTCGAT

Downstream 100 bases:

>100_bases
TGTCGGAAAAAATGCGTTTCAGGCTGGCATGGACAGTCGCCCCACTGTTGCTGGCAGGGTTGATGTTCGCCAATGTCGCA
CAAGGCAGCGTGTCGCTCTC

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MKKLILAALLALASESVAASGFPVTVDNCGQPLTFVQAPQRAVIQDINMSQMAFALQLQPAMVGVTGISGWYKNIPEFTQ
QRGTIPELAPKYPTVENLLAVNPDLFFAGWNYGLRGDVTPQALAKFNIKTLILSESCIHIDSHRPRASLDLLYGDMIRLG
KVFGKQEQAETLVSVWKQQVTDIHRKIATQKPIKVFLYDSGEDKPYTSGAYAMPTAIIEAAGAKNVMDSLNTSWATTNWE
SVAAAEPEFIILVDYQAETTDDTDQRQLFLEQHPLMKHTRAVLHHRYLKLKYQELTPGPVNIDAIQKLAHALYPAAFT

Sequences:

>Translated_318_residues
MKKLILAALLALASESVAASGFPVTVDNCGQPLTFVQAPQRAVIQDINMSQMAFALQLQPAMVGVTGISGWYKNIPEFTQ
QRGTIPELAPKYPTVENLLAVNPDLFFAGWNYGLRGDVTPQALAKFNIKTLILSESCIHIDSHRPRASLDLLYGDMIRLG
KVFGKQEQAETLVSVWKQQVTDIHRKIATQKPIKVFLYDSGEDKPYTSGAYAMPTAIIEAAGAKNVMDSLNTSWATTNWE
SVAAAEPEFIILVDYQAETTDDTDQRQLFLEQHPLMKHTRAVLHHRYLKLKYQELTPGPVNIDAIQKLAHALYPAAFT
>Mature_318_residues
MKKLILAALLALASESVAASGFPVTVDNCGQPLTFVQAPQRAVIQDINMSQMAFALQLQPAMVGVTGISGWYKNIPEFTQ
QRGTIPELAPKYPTVENLLAVNPDLFFAGWNYGLRGDVTPQALAKFNIKTLILSESCIHIDSHRPRASLDLLYGDMIRLG
KVFGKQEQAETLVSVWKQQVTDIHRKIATQKPIKVFLYDSGEDKPYTSGAYAMPTAIIEAAGAKNVMDSLNTSWATTNWE
SVAAAEPEFIILVDYQAETTDDTDQRQLFLEQHPLMKHTRAVLHHRYLKLKYQELTPGPVNIDAIQKLAHALYPAAFT

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 35284; Mature: 35284

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLILAALLALASESVAASGFPVTVDNCGQPLTFVQAPQRAVIQDINMSQMAFALQLQP
CHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHCCHHHHHHHCCHHHHHHHEEECC
AMVGVTGISGWYKNIPEFTQQRGTIPELAPKYPTVENLLAVNPDLFFAGWNYGLRGDVTP
HHEEEECCCHHHHCCHHHHHHCCCCCCCCCCCCCHHHHEECCCCEEEECCCCCCCCCCCH
QALAKFNIKTLILSESCIHIDSHRPRASLDLLYGDMIRLGKVFGKQEQAETLVSVWKQQV
HHHHHHCCEEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
TDIHRKIATQKPIKVFLYDSGEDKPYTSGAYAMPTAIIEAAGAKNVMDSLNTSWATTNWE
HHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCC
SVAAAEPEFIILVDYQAETTDDTDQRQLFLEQHPLMKHTRAVLHHRYLKLKYQELTPGPV
HHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHEEEEEECCCCCC
NIDAIQKLAHALYPAAFT
CHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKKLILAALLALASESVAASGFPVTVDNCGQPLTFVQAPQRAVIQDINMSQMAFALQLQP
CHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHCCHHHHHHHCCHHHHHHHEEECC
AMVGVTGISGWYKNIPEFTQQRGTIPELAPKYPTVENLLAVNPDLFFAGWNYGLRGDVTP
HHEEEECCCHHHHCCHHHHHHCCCCCCCCCCCCCHHHHEECCCCEEEECCCCCCCCCCCH
QALAKFNIKTLILSESCIHIDSHRPRASLDLLYGDMIRLGKVFGKQEQAETLVSVWKQQV
HHHHHHCCEEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
TDIHRKIATQKPIKVFLYDSGEDKPYTSGAYAMPTAIIEAAGAKNVMDSLNTSWATTNWE
HHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCC
SVAAAEPEFIILVDYQAETTDDTDQRQLFLEQHPLMKHTRAVLHHRYLKLKYQELTPGPV
HHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHEEEEEECCCCCC
NIDAIQKLAHALYPAAFT
CHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]