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The map label for this gene is ybcM [H]

Identifier: 157157515

GI number: 157157515

Start: 2140090

End: 2140887

Strand: Reverse

Name: ybcM [H]

Synonym: EcE24377A_2169

Alternate gene names: 157157515

Gene position: 2140887-2140090 (Counterclockwise)

Preceding gene: 157159221

Following gene: 157158236

Centisome position: 42.99

GC content: 37.72

Gene sequence:

>798_bases
ATGCTGGCAAAAGATAGGACTAACCTAAAGATTGAAGAAATACGGATGCATAAACATCATGAGATTCACAGGGTTAAGCC
TCTTATGCCAGCTTTATGTCGTATCCGTCAGGGAAAAAAAGTTATCAATTGGGAGACGCATAGTCTAACTGTTGATAATA
ATCAGATAATATTATTTCCCTGTGGATATGAATTTTATATTGCGAATTACCCAGAAGCAGGTCTTTATCTTGCAGAAATG
CTTTATTATCCCATTGATCTAATTGAAAAGTTCCAAAATCTTTATGCGATAACCGATCAAATTCGTAACACGACAGGTTT
CTGCTTACCTCAGAATCCCGAGTTAATATATTGTTGGGAGCAACTAAAAACATCTATTTCCCGAGGTTTCTCAACGCAAA
TTCAGGAACACTTAGCAATGGGCGTTCTACTTTCATTAGGAGCACATCATGTTAATTGTTTACTTTTATCAGATAGTAAA
CAATCATTAATAAGTCGTTGTTATAACCTAATGCTATCCGAACCTGGAACAAAATGGACAGCAAACAAGGTAGCGAGATA
TCTCTACATTTCTGTTTCCACATTGCATCGCCGTCTGGCAAGCGAGGGAGTAAGTTTTCAAAGTATATTGGACGACGTGA
GGTTAAATAATGCGTTGTCTGCTATACAAACGACAGTAAAACCCATCAGCGAGATTGCCAGGGAAAATGGTTACAAGTGT
CCTTCTCGTTTTACTGAAAGGTTCCATAATCGTTTTAAGATAACACCAAGAGAGCTAAGAAAAGCGTCCAGAGAGTAA

Upstream 100 bases:

>100_bases
TTCTAATTCCAGCGGAGCGTTAGTTGGTTATATGCTTAATGCCAATAAAATTGCAACCGCTGAGATAATACCCGTTTATG
AGGTAAAGTAGGATAAGAGT

Downstream 100 bases:

>100_bases
AAGTATTTTATGAAGGAGCAACAGCATCGATTTTTATTTTGGAAAATAAATACAGCATACTCAACCTATTGGAGCCTGAA
CAATCCGGTGACTTCTGCGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MLAKDRTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHSLTVDNNQIILFPCGYEFYIANYPEAGLYLAEM
LYYPIDLIEKFQNLYAITDQIRNTTGFCLPQNPELIYCWEQLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSK
QSLISRCYNLMLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC
PSRFTERFHNRFKITPRELRKASRE

Sequences:

>Translated_265_residues
MLAKDRTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHSLTVDNNQIILFPCGYEFYIANYPEAGLYLAEM
LYYPIDLIEKFQNLYAITDQIRNTTGFCLPQNPELIYCWEQLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSK
QSLISRCYNLMLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC
PSRFTERFHNRFKITPRELRKASRE
>Mature_265_residues
MLAKDRTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHSLTVDNNQIILFPCGYEFYIANYPEAGLYLAEM
LYYPIDLIEKFQNLYAITDQIRNTTGFCLPQNPELIYCWEQLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSK
QSLISRCYNLMLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC
PSRFTERFHNRFKITPRELRKASRE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786758, Length=265, Percent_Identity=91.6981132075472, Blast_Score=509, Evalue=1e-146,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30746; Mature: 30746

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAKDRTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHSLTVDNNQIILFP
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCEEEEEE
CGYEFYIANYPEAGLYLAEMLYYPIDLIEKFQNLYAITDQIRNTTGFCLPQNPELIYCWE
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHH
QLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSKQSLISRCYNLMLSEPGTKWT
HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCHH
ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PSRFTERFHNRFKITPRELRKASRE
HHHHHHHHHHCCCCCHHHHHHHCCC
>Mature Secondary Structure
MLAKDRTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHSLTVDNNQIILFP
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCEEEEEE
CGYEFYIANYPEAGLYLAEMLYYPIDLIEKFQNLYAITDQIRNTTGFCLPQNPELIYCWE
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHH
QLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSKQSLISRCYNLMLSEPGTKWT
HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCHH
ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PSRFTERFHNRFKITPRELRKASRE
HHHHHHHHHHCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]