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The map label for this gene is yjfF [H]

Identifier: 157163705

GI number: 157163705

Start: 4488778

End: 4489773

Strand: Direct

Name: yjfF [H]

Synonym: EcHS_A4484

Alternate gene names: 157163705

Gene position: 4488778-4489773 (Clockwise)

Preceding gene: 157163704

Following gene: 157163707

Centisome position: 96.67

GC content: 52.61

Gene sequence:

>996_bases
ATGATAAAACGTAATTTGCCACTGATGATCACCATCGGCGTCTTTGTGCTGGGCTATTTCTACTGCCTGACGCAGTTTCC
CGGTTTTGCTTCCACAAGAGTGATCTGCAATATCCTGACAGATAACGCCTTTCTTGGGATAATCGCCGTTGGCATGACCT
TTGTGATCCTCTCTGGCGGTATCGATCTCTCCGTCGGTTCGGTGATCGCCTTTACTGGCGTGTTTCTGGCAAAAGTGGTT
GGCGATTTCGGCCTCTCGCCGCTGCTGGCGTTTCCGCTAGTGCTGGTGATGGGCTGTGCCTTCGGCGCATTTATGGGGCT
TCTGATCGACGCCCTGAAGATCCCGGCATTTATCATTACGCTTGCGGGGATGTTCTTTTTGCGCGGCGTCAGCTATCTCG
TTTCGGAAGAGTCGATTCCGATAAACCATCCCATTTATGACACGCTCTCAAGCCTTGCGTGGAAAATCCCCGGCGGCGGT
CGCCTTAGTGCGATGGGGCTGTTGATGCTGGCGGTGGTGGTTATCGGTATTTTCCTTGCGCATCGTACCCGTTTTGGCAA
TCAGGTGTACGCTATTGGCGGCAACGCGACGTCGGCGAACCTGATGGGGATTTCTACTCGCAGCACCACTATTCGCATTT
ATATGCTCTCCACCGGACTGGCAACACTGGCGGGGATTGTCTTCTCGATTTATACCCAGGCCGGATATGCACTGGCGGGC
GTAGGTGTGGAACTGGACGCCATCGCGTCGGTGGTGATTGGCGGTACGTTGTTAAGTGGTGGCGTCGGGACGGTGCTTGG
GACGCTTTTTGGCGTGGCAATTCAGGGACTGATTCAGACTTACATAAACTTTGATGGCACGCTGAGTTCCTGGTGGACGA
AAATCGCCATCGGTATTTTGTTGTTTATTTTTATAGCATTACAGCGTGGATTAACGGTGCTGTGGGAGAATCGTCAGAGT
TCGCCAGTGACAAGAGTCAACATTGCGCAGCAATAA

Upstream 100 bases:

>100_bases
CCGCCGGAGATGAACCAGGTCGTAAAAGCGGTGGTGGTGCTTTGTGTGCTGATTGTTCAGTCGCAACGCTTTATCAGTCT
GATTAAAGGAGTACGTAGCC

Downstream 100 bases:

>100_bases
AAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCAACCAT
ATGGTCGTTGCCGACAAAGA

Product: inner membrane ABC transporter permease protein YjfF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MIKRNLPLMITIGVFVLGYFYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVV
GDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGG
RLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAG
VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQS
SPVTRVNIAQQ

Sequences:

>Translated_331_residues
MIKRNLPLMITIGVFVLGYFYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVV
GDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGG
RLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAG
VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQS
SPVTRVNIAQQ
>Mature_331_residues
MIKRNLPLMITIGVFVLGYFYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVV
GDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGG
RLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAG
VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQS
SPVTRVNIAQQ

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082395, Length=331, Percent_Identity=99.3957703927493, Blast_Score=642, Evalue=0.0,
Organism=Escherichia coli, GI1790191, Length=301, Percent_Identity=36.8770764119601, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1788896, Length=279, Percent_Identity=36.9175627240143, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1789992, Length=315, Percent_Identity=32.3809523809524, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI145693152, Length=272, Percent_Identity=31.6176470588235, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790524, Length=282, Percent_Identity=31.2056737588652, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787793, Length=322, Percent_Identity=30.1242236024845, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI145693214, Length=252, Percent_Identity=34.5238095238095, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34998; Mature: 34998

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKRNLPLMITIGVFVLGYFYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGG
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
IDLSVGSVIAFTGVFLAKVVGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIIT
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLA
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHH
HRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAG
HHHHCCCEEEEECCCCCCCEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCEEEE
VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGIL
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LFIFIALQRGLTVLWENRQSSPVTRVNIAQQ
HHHHHHHHCCCEEEECCCCCCCCEEEECCCC
>Mature Secondary Structure
MIKRNLPLMITIGVFVLGYFYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGG
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
IDLSVGSVIAFTGVFLAKVVGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIIT
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLA
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHH
HRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAG
HHHHCCCEEEEECCCCCCCEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCEEEE
VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGIL
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LFIFIALQRGLTVLWENRQSSPVTRVNIAQQ
HHHHHHHHCCCEEEECCCCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 2843822; 7984428 [H]