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The map label for this gene is yhdW [H]

Identifier: 157162750

GI number: 157162750

Start: 3463385

End: 3464410

Strand: Direct

Name: yhdW [H]

Synonym: EcHS_A3462

Alternate gene names: 157162750

Gene position: 3463385-3464410 (Clockwise)

Preceding gene: 157162749

Following gene: 157162751

Centisome position: 74.59

GC content: 49.42

Gene sequence:

>1026_bases
ATGAAAAAGATGATGATAGCCACACTGGCTGCCGCCAGCGTGCTGCTTGCCGTTGCAAATCAGGCGCATGCTGGCGCGAC
GCTTGATGCCGTACAGAAAAAAGGTTTTGTGCAATGCGGGATCAGTGATGGATTACCTGGGTTCTCTTATGCCGATGCTG
ACGGTAAATTTTCAGGTATTGATGTTGATATTTGTCGTGGTGTTGCCGCTGCTGTATTTGGTGACGACACGAAAGTGAAA
TATACCCCACTCACAGCAAAAGAACGCTTCACGGCTTTACAGTCAGGGGAAGTGGATTTGCTCTCCCGTAATACGACCTG
GACTTCATCTCGCGACGCCGGGATGGGAATGGCATTTACTGGCGTCACTTATTACGACGGCATTGGCTTCCTGACGCACG
ATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCGGGTACTGATACCGAACTCAAC
GTTGCCGACTATTTCAAGGCAAACAATATGAAGTACACACCGGTGACTTTCGATCGCTCTGACGAATCAGCGAAGGCACT
GGAATCTGGTCGCTGCGATACGCTGGCCTCGGATCAGTCGCAACTGTATGCCCTGCGCATCAAATTAAGCAACCCAGCTG
AATGGATTGTCTTACCGGAGGTTATCTCTAAAGAACCGCTTGGGCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCG
ATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTTGATGAAAAAGCGGC
TAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGTTGGATAATAAAT
GGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGTTCAGAAAGCCCGCTGAAA
ATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAA

Upstream 100 bases:

>100_bases
AAGCTGGCACTACTTTTGCTTATAAGAGGATGGCCACAGACAGGTAAAAGACGTTTCCCAAACGTCCTATAACGATAATT
TTCGCCTCACAGGAAGCATT

Downstream 100 bases:

>100_bases
GTCGGTGTGAGGTAACGAGCGTCGCGACGGCGGCGCTCTCTTCAGCGTTATGCTTTCCGAGGTTTCTATGTCTCATCGCC
GCTCAACCGTTAAAGGCTCA

Product: amino acid ABC transporter, periplasmic amino acid-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MKKMMIATLAAASVLLAVANQAHAGATLDAVQKKGFVQCGISDGLPGFSYADADGKFSGIDVDICRGVAAAVFGDDTKVK
YTPLTAKERFTALQSGEVDLLSRNTTWTSSRDAGMGMAFTGVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELN
VADYFKANNMKYTPVTFDRSDESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFS
IVRWTLFAMLNAEEMGINSQNVDEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIKQVGNYSEIFERNVGSESPLK
IKRGQNNLWNNGGIQYAPPVR

Sequences:

>Translated_341_residues
MKKMMIATLAAASVLLAVANQAHAGATLDAVQKKGFVQCGISDGLPGFSYADADGKFSGIDVDICRGVAAAVFGDDTKVK
YTPLTAKERFTALQSGEVDLLSRNTTWTSSRDAGMGMAFTGVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELN
VADYFKANNMKYTPVTFDRSDESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFS
IVRWTLFAMLNAEEMGINSQNVDEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIKQVGNYSEIFERNVGSESPLK
IKRGQNNLWNNGGIQYAPPVR
>Mature_341_residues
MKKMMIATLAAASVLLAVANQAHAGATLDAVQKKGFVQCGISDGLPGFSYADADGKFSGIDVDICRGVAAAVFGDDTKVK
YTPLTAKERFTALQSGEVDLLSRNTTWTSSRDAGMGMAFTGVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELN
VADYFKANNMKYTPVTFDRSDESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFS
IVRWTLFAMLNAEEMGINSQNVDEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIKQVGNYSEIFERNVGSESPLK
IKRGQNNLWNNGGIQYAPPVR

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

Organism=Escherichia coli, GI1786876, Length=226, Percent_Identity=26.1061946902655, Blast_Score=78, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 37047; Mature: 37047

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS01039 SBP_BACTERIAL_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKMMIATLAAASVLLAVANQAHAGATLDAVQKKGFVQCGISDGLPGFSYADADGKFSGI
CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCC
DVDICRGVAAAVFGDDTKVKYTPLTAKERFTALQSGEVDLLSRNTTWTSSRDAGMGMAFT
CHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEE
GVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRS
CCEEECCCCEEECCCHHHCHHHHCCCEEEEEECCCCCCCCHHHHHCCCCEEECCEEECCC
DESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFS
CHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCEEEEHHHHCCCCCCHHHHCCCHHHHH
IVRWTLFAMLNAEEMGINSQNVDEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIK
HHHHHHHHHHCHHHHCCCCCCCCHHCCCCCCCHHHHHHCCCCCCCCCCEECCHHHHHHHH
QVGNYSEIFERNVGSESPLKIKRGQNNLWNNGGIQYAPPVR
HHCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEECCCCC
>Mature Secondary Structure
MKKMMIATLAAASVLLAVANQAHAGATLDAVQKKGFVQCGISDGLPGFSYADADGKFSGI
CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCC
DVDICRGVAAAVFGDDTKVKYTPLTAKERFTALQSGEVDLLSRNTTWTSSRDAGMGMAFT
CHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEE
GVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRS
CCEEECCCCEEECCCHHHCHHHHCCCEEEEEECCCCCCCCHHHHHCCCCEEECCEEECCC
DESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFS
CHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCEEEEHHHHCCCCCCHHHHCCCHHHHH
IVRWTLFAMLNAEEMGINSQNVDEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIK
HHHHHHHHHHCHHHHCCCCCCCCHHCCCCCCCHHHHHHCCCCCCCCCCEECCHHHHHHHH
QVGNYSEIFERNVGSESPLKIKRGQNNLWNNGGIQYAPPVR
HHCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]