Click here to switch to the map view.

The map label for this gene is yhcM [H]

Identifier: 157162710

GI number: 157162710

Start: 3422458

End: 3423585

Strand: Reverse

Name: yhcM [H]

Synonym: EcHS_A3421

Alternate gene names: 157162710

Gene position: 3423585-3422458 (Counterclockwise)

Preceding gene: 157162714

Following gene: 157162709

Centisome position: 73.73

GC content: 52.22

Gene sequence:

>1128_bases
ATGCAAAGCGTTACCCCAACATCGCAATACCTGAAGGCGCTCAATGAAGGCAGCCATCAACCCGACGACGTTCAAAAAGA
GGCCGTCAGCCGCCTGGAAATTATTTATCAAGAACTCATCAATAGCAGGCCACCAGCCCCCAGGACGAGTGGGCTAATGG
CGCGGGTCGGTAAGCTGTGGGGTAAACGCGAAGACACAAAGCATACGCCAGTGCGTGGCTTATATATGTGGGGCGGTGTA
GGACGCGGGAAAACCTGGCTGATGGACCTTTTCTATCAAAGCCTGCCGGGAGAGCGGAAACAGCGCCTGCACTTTCACCG
TTTTATGCTGCGGGTGCACGAAGAGCTAACTGCCTTACAGGGGCAGACCGATCCGCTGGAAATTATTGCCGATCGCTTTA
AAGCCGAAACTGACGTGCTCTGTTTTGACGAATTTTTTGTTTCTGATATTACCGACGCCATGCTACTTGGCGGTCTGATG
AAAGCCCTGTTCACCCGCGGTATTACCCTGGTAGCGACGTCAAATATTCCGCCGGACGAACTTTATCGAAATGGCCTGCA
ACGTGCGCGTTTTCTGCCTGCAATCGATGCCATTAAACAGCATTGTGATGTAATGAACGTGGACGCTGGTGTTGATTATC
GACTGCGTACACTCACTCAGGCGCATCTGTGGCTTTCGCCACTCAACGATGAAACCCGGGCGCAGATGGATAAACTATGG
TTGGCGCTGGCGGGGGCGAAACGAGAAAATTCACCGACGTTAGAAATCAACCATCGGCCATTGGCGACAATGGGCGTCGA
GAACCAGACGCTGGCGGTCTCTTTTACTACGCTGTGCGTCGACGCCCGCAGTCAGCATGACTATATTGCGCTCTCACGTC
TCTTTCATACGGTCATGTTGTTTGATGTACCAGTTATGACGCGGTTGATGGAGAGCGAAGCGCGGCGCTTTATTGCGCTG
GTGGATGAGTTTTACGAGCGCCATGTCAAATTAGTGGTGAGTGCAGAAGTGCCGCTGTATGCAATTTATCAGGGCGAGCG
GCTGAAATTTGAGTTCCAGCGTTGCCTGTCACGTCTGCAAGAGATGCAAAGCGAAGAGTATCTGAAGCGCGAGCATTTAG
CAGGTTAA

Upstream 100 bases:

>100_bases
AAGTGGAATCCCGACTGCATATCGCGTAGTGTAGAACGGCCTTTTTTTCGTCAACCGTGAACAACGGCGCACCGATTATT
CAAGGAATAACAATAAGATC

Downstream 100 bases:

>100_bases
AACCTGCCACAAATCACAAAAAGGGGTCGATCTTTGACCCCGACTTCTCTATAATCCTGCGACCCCACGTTACAAGAAAG
TTTTTTTCCCAAAACTTTTT

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MQSVTPTSQYLKALNEGSHQPDDVQKEAVSRLEIIYQELINSRPPAPRTSGLMARVGKLWGKREDTKHTPVRGLYMWGGV
GRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTALQGQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLM
KALFTRGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTLTQAHLWLSPLNDETRAQMDKLW
LALAGAKRENSPTLEINHRPLATMGVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIAL
VDEFYERHVKLVVSAEVPLYAIYQGERLKFEFQRCLSRLQEMQSEEYLKREHLAG

Sequences:

>Translated_375_residues
MQSVTPTSQYLKALNEGSHQPDDVQKEAVSRLEIIYQELINSRPPAPRTSGLMARVGKLWGKREDTKHTPVRGLYMWGGV
GRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTALQGQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLM
KALFTRGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTLTQAHLWLSPLNDETRAQMDKLW
LALAGAKRENSPTLEINHRPLATMGVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIAL
VDEFYERHVKLVVSAEVPLYAIYQGERLKFEFQRCLSRLQEMQSEEYLKREHLAG
>Mature_375_residues
MQSVTPTSQYLKALNEGSHQPDDVQKEAVSRLEIIYQELINSRPPAPRTSGLMARVGKLWGKREDTKHTPVRGLYMWGGV
GRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTALQGQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLM
KALFTRGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTLTQAHLWLSPLNDETRAQMDKLW
LALAGAKRENSPTLEINHRPLATMGVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIAL
VDEFYERHVKLVVSAEVPLYAIYQGERLKFEFQRCLSRLQEMQSEEYLKREHLAG

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=433, Percent_Identity=33.7182448036951, Blast_Score=226, Evalue=3e-59,
Organism=Escherichia coli, GI1789627, Length=375, Percent_Identity=98.4, Blast_Score=768, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17505769, Length=416, Percent_Identity=33.4134615384615, Blast_Score=242, Evalue=3e-64,
Organism=Saccharomyces cerevisiae, GI6320783, Length=401, Percent_Identity=29.1770573566085, Blast_Score=163, Evalue=5e-41,
Organism=Drosophila melanogaster, GI20129913, Length=426, Percent_Identity=31.2206572769953, Blast_Score=194, Evalue=9e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 43096; Mature: 43096

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSVTPTSQYLKALNEGSHQPDDVQKEAVSRLEIIYQELINSRPPAPRTSGLMARVGKLW
CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
GKREDTKHTPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTALQ
CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
GQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLMKALFTRGITLVATSNIPPDE
CCCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHH
LYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTLTQAHLWLSPLNDETRAQMDKLW
HHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LALAGAKRENSPTLEINHRPLATMGVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVML
HHHHCCCCCCCCEEEECCCCCEEECCCCCEEEEEHHHHEECCCCCCHHHHHHHHHHHHHH
FDVPVMTRLMESEARRFIALVDEFYERHVKLVVSAEVPLYAIYQGERLKFEFQRCLSRLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEECCCCHHHHHHHHHHHHH
EMQSEEYLKREHLAG
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MQSVTPTSQYLKALNEGSHQPDDVQKEAVSRLEIIYQELINSRPPAPRTSGLMARVGKLW
CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
GKREDTKHTPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTALQ
CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
GQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLMKALFTRGITLVATSNIPPDE
CCCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHH
LYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTLTQAHLWLSPLNDETRAQMDKLW
HHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LALAGAKRENSPTLEINHRPLATMGVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVML
HHHHCCCCCCCCEEEECCCCCEEECCCCCEEEEEHHHHEECCCCCCHHHHHHHHHHHHHH
FDVPVMTRLMESEARRFIALVDEFYERHVKLVVSAEVPLYAIYQGERLKFEFQRCLSRLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEECCCCHHHHHHHHHHHHH
EMQSEEYLKREHLAG
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]