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The map label for this gene is ygeK [H]

Identifier: 157162307

GI number: 157162307

Start: 3013014

End: 3013646

Strand: Reverse

Name: ygeK [H]

Synonym: EcHS_A3002

Alternate gene names: 157162307

Gene position: 3013646-3013014 (Counterclockwise)

Preceding gene: 157162308

Following gene: 157162303

Centisome position: 64.9

GC content: 35.55

Gene sequence:

>633_bases
ATGGGAAAAATTAAAATTGTAGTTTCAGATCAGCAGCCGTTTATGATTGATGGGATAATTGGATTTCTCGGACATTATCC
TGATTTATATGAGGTTGTTGGGGGCTATAAAGATCTGAAGAAAGCTATAGCGGAGTGTAACAAATCTACAGCCCAAATAT
TTATTTTAGGAGAATTTGCAGGTGGAATGATGGGGTCCGAACTCGTAAAATGGGTTAAATCGCATAAGATAGATGCTCAT
ATTATTACATTTGTAGCAAAGATGCCGTATATTGATTCAATAAAATTGCTTGAAGCAGGTGCGAAAGGATGCGTATGGAA
AACCAGTCACCCGGCGAAACTAAATCGTGCTATTGATTCGATTAGTAATGGTTACACTTATTTTGATAGTGTACATATGG
ATTGTGAAAAAATATCTTCCAGGTATTCCTCTGATAATCAACTTACAAATCGTGAGTCAGAAATATTACAACTCATAGCT
GATGGTAAAACAAACAAAGAAATCGCTAATTTCTTGCAGTTAAGCAGGAAAACAGTCGAAACTCATAGACTCAATATCAT
GAAGAAATTAGATGTTCACAGTGGTATCGAGTTGATCAAAACAGCTTTACGTATGGGTGTTTGCACTATATAA

Upstream 100 bases:

>100_bases
CATTATTATTTCATCAATGTATTCTTTGGATTTTGCTTATAATAATGGAAGGGATGATTATAAATGAATACGTTAAAGCA
TTTACACTCAGGATGAATAT

Downstream 100 bases:

>100_bases
AAAAAAGAGGCTTTAGGCTCATTTTGCTGAAGCCTTACGATTGTCTAGTTCATTAAGCCTGGTATATACAATATATATTT
TGGGGCATATTGCTGTCTCT

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MGKIKIVVSDQQPFMIDGIIGFLGHYPDLYEVVGGYKDLKKAIAECNKSTAQIFILGEFAGGMMGSELVKWVKSHKIDAH
IITFVAKMPYIDSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMDCEKISSRYSSDNQLTNRESEILQLIA
DGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMGVCTI

Sequences:

>Translated_210_residues
MGKIKIVVSDQQPFMIDGIIGFLGHYPDLYEVVGGYKDLKKAIAECNKSTAQIFILGEFAGGMMGSELVKWVKSHKIDAH
IITFVAKMPYIDSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMDCEKISSRYSSDNQLTNRESEILQLIA
DGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMGVCTI
>Mature_209_residues
GKIKIVVSDQQPFMIDGIIGFLGHYPDLYEVVGGYKDLKKAIAECNKSTAQIFILGEFAGGMMGSELVKWVKSHKIDAHI
ITFVAKMPYIDSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMDCEKISSRYSSDNQLTNRESEILQLIAD
GKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMGVCTI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=196, Percent_Identity=28.5714285714286, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786747, Length=205, Percent_Identity=29.2682926829268, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788222, Length=186, Percent_Identity=27.9569892473118, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1790102, Length=207, Percent_Identity=29.4685990338164, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1788546, Length=206, Percent_Identity=30.0970873786408, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788712, Length=199, Percent_Identity=25.6281407035176, Blast_Score=60, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23443; Mature: 23311

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKIKIVVSDQQPFMIDGIIGFLGHYPDLYEVVGGYKDLKKAIAECNKSTAQIFILGEFA
CCEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECCC
GGMMGSELVKWVKSHKIDAHIITFVAKMPYIDSIKLLEAGAKGCVWKTSHPAKLNRAIDS
CCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCEECCCCCHHHHHHHHH
ISNGYTYFDSVHMDCEKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVE
HHCCCEEHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
THRLNIMKKLDVHSGIELIKTALRMGVCTI
HHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GKIKIVVSDQQPFMIDGIIGFLGHYPDLYEVVGGYKDLKKAIAECNKSTAQIFILGEFA
CEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECCC
GGMMGSELVKWVKSHKIDAHIITFVAKMPYIDSIKLLEAGAKGCVWKTSHPAKLNRAIDS
CCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCEECCCCCHHHHHHHHH
ISNGYTYFDSVHMDCEKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVE
HHCCCEEHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
THRLNIMKKLDVHSGIELIKTALRMGVCTI
HHHHHHHHHHHHHCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]