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The map label for this gene is yedS [H]

Identifier: 157161434

GI number: 157161434

Start: 2054141

End: 2054344

Strand: Direct

Name: yedS [H]

Synonym: EcHS_A2067

Alternate gene names: 157161434

Gene position: 2054141-2054344 (Clockwise)

Preceding gene: 157161433

Following gene: 157161435

Centisome position: 44.24

GC content: 39.22

Gene sequence:

>204_bases
ATGTACAACAATGGTAATTATCATTATACCAATAAAGATCTGGTTAAATACGTTGAGGTTGGTGCAACCTACTACTTTAA
CAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGATGACTTCTACGCAAACAACGGCATCG
CTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAA

Upstream 100 bases:

>100_bases
TCTAGATTATCCGTGGCGATTCAAGTACCAATTTGATTTCGGCCTGCGTCCTTCAATTGCTTACCTCCAATCTAAAGGTA
AGGATTTAGGTGGTCAAGAA

Downstream 100 bases:

>100_bases
TCAGCCAACGTGCTGCGGCGTGTTACTGTAAAACTAAACACTAGCCTGAGTTCGTCCCTCATCGAATTCAGGCTTTTTTA
TTGGCATTTCATCTCCATCT

Product: outer membrane protein, truncation

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
MYNNGNYHYTNKDLVKYVEVGATYYFNKNMSTYVDYKINLLDNDDDFYANNGIATDDIVAVGLVYQF

Sequences:

>Translated_67_residues
MYNNGNYHYTNKDLVKYVEVGATYYFNKNMSTYVDYKINLLDNDDDFYANNGIATDDIVAVGLVYQF
>Mature_67_residues
MYNNGNYHYTNKDLVKYVEVGATYYFNKNMSTYVDYKINLLDNDDDFYANNGIATDDIVAVGLVYQF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1787641, Length=57, Percent_Identity=84.2105263157895, Blast_Score=100, Evalue=3e-23,
Organism=Escherichia coli, GI1788544, Length=59, Percent_Identity=72.8813559322034, Blast_Score=83, Evalue=4e-18,
Organism=Escherichia coli, GI1786436, Length=57, Percent_Identity=64.9122807017544, Blast_Score=72, Evalue=7e-15,
Organism=Escherichia coli, GI1787160, Length=55, Percent_Identity=67.2727272727273, Blast_Score=72, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 7813; Mature: 7813

Theoretical pI: Translated: 4.07; Mature: 4.07

Prosite motif: PS00576 GRAM_NEG_PORIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNNGNYHYTNKDLVKYVEVGATYYFNKNMSTYVDYKINLLDNDDDFYANNGIATDDIVA
CCCCCCEEECCHHHHHHEECCEEEEECCCCCEEEEEEEEEECCCCCEEECCCCCCCCEEE
VGLVYQF
EEEEECC
>Mature Secondary Structure
MYNNGNYHYTNKDLVKYVEVGATYYFNKNMSTYVDYKINLLDNDDDFYANNGIATDDIVA
CCCCCCEEECCHHHHHHEECCEEEEECCCCCEEEEEEEEEECCCCCEEECCCCCCCCEEE
VGLVYQF
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]