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The map label for this gene is yddL

Identifier: 157160947

GI number: 157160947

Start: 1562551

End: 1562841

Strand: Reverse

Name: yddL

Synonym: EcHS_A1555

Alternate gene names: 157160947

Gene position: 1562841-1562551 (Counterclockwise)

Preceding gene: 157160948

Following gene: 157160946

Centisome position: 33.66

GC content: 41.92

Gene sequence:

>291_bases
ATGAAATTAAAAATAGTTGCGGTGGTTGTAACTGGTTTGTTAGCTGCGAACGTAGCACACGCTGCCGAAGTCTATAACAA
GGATGGTAATAAACTCGACCTTTATGGCAAGGTTACCGCTCTACGTTATTTTACTGATGATAAGCGTGACGATGGTGATA
AAACTTATGCCCGTCTCGGCTTTAAAGGAGAAACGCAAATCAATGATCAAATGATTGGTTTTGGTCACTGGGAATATGAT
TTTAAAGGCTATAACGATGAAGCCAACGGCTCGCGCGGCAAGAATCTCTGA

Upstream 100 bases:

>100_bases
ATCACCATTCTAATTTAAAAACAGTATGTCATTTATAAATGACGCCGTTTAAAATTCGTTTAGAAAATACGTTTAACGAT
AATTAAAAGGATTCTGTTAA

Downstream 100 bases:

>100_bases
TTGAGTTAAGTGCCCATCACAATATGATCACTGACCTTATATTACACAATCATCCCAGGATGAAAACAATCACTTTAAAC
GACAACCATATTGCACATTT

Product: outer membrane porin, truncation

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 96; Mature: 96

Protein sequence:

>96_residues
MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYFTDDKRDDGDKTYARLGFKGETQINDQMIGFGHWEYD
FKGYNDEANGSRGKNL

Sequences:

>Translated_96_residues
MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYFTDDKRDDGDKTYARLGFKGETQINDQMIGFGHWEYD
FKGYNDEANGSRGKNL
>Mature_96_residues
MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYFTDDKRDDGDKTYARLGFKGETQINDQMIGFGHWEYD
FKGYNDEANGSRGKNL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788544, Length=87, Percent_Identity=62.0689655172414, Blast_Score=117, Evalue=2e-28,
Organism=Escherichia coli, GI1786436, Length=94, Percent_Identity=53.1914893617021, Blast_Score=109, Evalue=3e-26,
Organism=Escherichia coli, GI1787160, Length=92, Percent_Identity=57.6086956521739, Blast_Score=108, Evalue=8e-26,
Organism=Escherichia coli, GI1787641, Length=89, Percent_Identity=64.0449438202247, Blast_Score=100, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDDL_ECOLI (P77519)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   C64900
- RefSeq:   AP_002095.1
- HSSP:   Q48473
- ProteinModelPortal:   P77519
- SMR:   P77519
- EnsemblBacteria:   EBESCT00000018297
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW1468
- EcoGene:   EG13783
- GeneTree:   EBGT00050000008409
- HOGENOM:   HBG467001
- OMA:   LCWSEIC
- BioCyc:   EcoCyc:G6773-MONOMER
- Genevestigator:   P77519
- GO:   GO:0016020
- InterPro:   IPR001897
- InterPro:   IPR001702
- Gene3D:   G3DSA:2.40.160.10
- PRINTS:   PR00183

Pfam domain/function: PF00267 Porin_1

EC number: NA

Molecular weight: Translated: 10736; Mature: 10736

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYFTDDKRDDGDKTYARLG
CCEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCCCCCCCEEEEEC
FKGETQINDQMIGFGHWEYDFKGYNDEANGSRGKNL
CCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYFTDDKRDDGDKTYARLG
CCEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCCCCCCCEEEEEC
FKGETQINDQMIGFGHWEYDFKGYNDEANGSRGKNL
CCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503