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The map label for this gene is yncD [H]

Identifier: 157160930

GI number: 157160930

Start: 1541933

End: 1544035

Strand: Reverse

Name: yncD [H]

Synonym: EcHS_A1538

Alternate gene names: 157160930

Gene position: 1544035-1541933 (Counterclockwise)

Preceding gene: 157160933

Following gene: 157160927

Centisome position: 33.25

GC content: 51.59

Gene sequence:

>2103_bases
ATGAAGATTTTTTCCGTCCGACAGACCGTTTTGCCCGCACTACTTGCCCTTTCCCCCGTTGTTTTTGCCGCTGATGAACA
GACCATGATTGTCAGTGCCGCACCGCAGGTGGTTTCAGAACTGGATACCCCAGCAGCAGTAAGCGTGGTGGATGGCGAGG
AGATGCGCCTGGCAACACCGCGCATTAACTTGTCCGAATCACTGACCAGCGTGCCTGGTTTGCAGGTACAAAATCGGCAG
AACTATGCGCAAGATTTACAGCTGTCGATTCGCGGATTTGGCTCCCGCTCCACTTACGGAATTCGCGGTATTCGCCTGTA
TGTGGACGGTATTCCCGCTACCATGCCCGACGGGCAAGGGCAAACATCCAACATCGATTTAAGCAGTGTGCAAAATGTGG
AAGTGCTGCGTGGCCCCTTCTCTGCCCTGTATGGCAACGCGTCTGGCGGTGTAATGAATGTCACCACCCAGACCGGGCAA
CAGCCACCAACCATTGAAGCCAGCAGTTACTACGGCAGTTTTGGCAGCTGGCGCTATGGGCTCAAAGCAACGGGTGCAAC
GGGCGACGGCACACAGCCCGGCGATGTCGATTACACCGTCTCAACCACGCGTTTTACGACCCACGGCTATCGTGACCATA
GTGGCGCACAGAAAAATTTAGCTAATGCCAAACTTGGCGTACGCATTGATGACGCCAGCAAATTAAGCCTGATTTTCAAT
AGCGTGGATATCAAAGCAGATGACCCTGGTGGGCTAACCAAAGCAGAATGGAAAGCGAATCCGCAACAAGCGCCACGCGC
TGAACAATACGACACGCGAAAAACCATCAAGCAAACTCAGGCTGGGTTGCGCTATGAACGTAGCCTGAGTTCGCGGGATG
ATATGAGTGTGATGATGTATGCCGGAGAGCGAGAAACGACCCAGTACCAGTCAATACCCATGGCACCACAACTTAACCCG
TCACATGCGGGCGGCGTGATTACCCTGCAACGCCATTACCAGGGAATAGACAGCCGCTGGACACACCGTGGTGAACTGGG
CGTTCCGGTCACGTTCACTACCGGCCTGAACTACGAAAACATGAGTGAAAACCGCAAGGGCTACAATAACTTCCGCCTGA
ATAGCGGCATGCCGGAGTACGGGCAAAAAGGTGAGTTGCGTCGCGACGAACGCAATCTGATGTGGAACATCGATCCCTAT
TTACAGACGCAGTGGCAGCTGAGCGAAAAACTGTCGCTGGATGCTGGCGTGCGCTACAGCTCCGTGTGGTTTGATTCCAA
CGACCATTACATTACTCCGGGTAACGGCGATGACAGCGGTGATGCCAGTTATCACAAATGGCTACCAGCCGGATCGTTAA
AATATGCAATGACCGATGCCTGGAATATCTATCTGGCAGCCGGGCGTGGTTTTGAAACGCCGACGATTAATGAGCTGTCT
TATCGGGCTGATGGGCAAAGCGGTATGAACTTTGGTTTAAAACCATCCACCAACGATACAATTGAGATCGGCAGTAAAAC
GCGTATTGGTGATGGGCTGCTTAGTCTCGCATTGTTCCAGACCGACACCGATGATGAAATTGTTGTCGATAGCAGTAGCG
GTGGGCGTACGACTTACAAAAATGCTGGAAAGACCCGTCGTCAAGGCGCTGAACTGGCATGGGATCAACGTTTCGCGGGA
GATTTTCGCGTAAACGCGTCCTGGACCTGGCTTGATGCGACCTATCGCAGCAATGTTTGCAATGAACAGGATTGTAACGG
TAATCGGATGCCTGGGATCGCCCGTAATATGGGCTTTGCGTCGATAGGTTATGTACCGGAAGATGGCTGGTATGCAGGCA
CGGAAGCGCGTTATATGGGCGATATTATGGCAGATGATGAAAATACGGCCAAGGCGCCGTCTTATACTCTCATCGGCTTA
TTCACCGGGTATAAATACAATTACCACAATTTAACTGTGGATTTATTTGGTCGTGTCGATAATTTATTCGATAAAGAATA
CGTTGGTTCTGTCATTGTCAATGAGTCAAACGGGCGATATTACGAACCTGCGCCCGGGCGAAATTATGGTGTCGGCGTGA
ATATCGCATGGCGATTTGAGTAA

Upstream 100 bases:

>100_bases
ATTTTCTCAATTACTTAACGTATCGTGCCGTTTCATTTTCCATAAATTTACAATTTCATTACCATAACGGCGTTTTCCCA
TTCTTAACCTGGCTTTTTTC

Downstream 100 bases:

>100_bases
TTACCTTGATGCCCGGTATTTGCCGGGCATTTACTTTAACGATTGTATTGCTGGTATAAAATAGCAATATTTTGTTGCAT
AATTTCAGCAAGACAATGTC

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 700; Mature: 700

Protein sequence:

>700_residues
MKIFSVRQTVLPALLALSPVVFAADEQTMIVSAAPQVVSELDTPAAVSVVDGEEMRLATPRINLSESLTSVPGLQVQNRQ
NYAQDLQLSIRGFGSRSTYGIRGIRLYVDGIPATMPDGQGQTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQ
QPPTIEASSYYGSFGSWRYGLKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQKNLANAKLGVRIDDASKLSLIFN
SVDIKADDPGGLTKAEWKANPQQAPRAEQYDTRKTIKQTQAGLRYERSLSSRDDMSVMMYAGERETTQYQSIPMAPQLNP
SHAGGVITLQRHYQGIDSRWTHRGELGVPVTFTTGLNYENMSENRKGYNNFRLNSGMPEYGQKGELRRDERNLMWNIDPY
LQTQWQLSEKLSLDAGVRYSSVWFDSNDHYITPGNGDDSGDASYHKWLPAGSLKYAMTDAWNIYLAAGRGFETPTINELS
YRADGQSGMNFGLKPSTNDTIEIGSKTRIGDGLLSLALFQTDTDDEIVVDSSSGGRTTYKNAGKTRRQGAELAWDQRFAG
DFRVNASWTWLDATYRSNVCNEQDCNGNRMPGIARNMGFASIGYVPEDGWYAGTEARYMGDIMADDENTAKAPSYTLIGL
FTGYKYNYHNLTVDLFGRVDNLFDKEYVGSVIVNESNGRYYEPAPGRNYGVGVNIAWRFE

Sequences:

>Translated_700_residues
MKIFSVRQTVLPALLALSPVVFAADEQTMIVSAAPQVVSELDTPAAVSVVDGEEMRLATPRINLSESLTSVPGLQVQNRQ
NYAQDLQLSIRGFGSRSTYGIRGIRLYVDGIPATMPDGQGQTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQ
QPPTIEASSYYGSFGSWRYGLKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQKNLANAKLGVRIDDASKLSLIFN
SVDIKADDPGGLTKAEWKANPQQAPRAEQYDTRKTIKQTQAGLRYERSLSSRDDMSVMMYAGERETTQYQSIPMAPQLNP
SHAGGVITLQRHYQGIDSRWTHRGELGVPVTFTTGLNYENMSENRKGYNNFRLNSGMPEYGQKGELRRDERNLMWNIDPY
LQTQWQLSEKLSLDAGVRYSSVWFDSNDHYITPGNGDDSGDASYHKWLPAGSLKYAMTDAWNIYLAAGRGFETPTINELS
YRADGQSGMNFGLKPSTNDTIEIGSKTRIGDGLLSLALFQTDTDDEIVVDSSSGGRTTYKNAGKTRRQGAELAWDQRFAG
DFRVNASWTWLDATYRSNVCNEQDCNGNRMPGIARNMGFASIGYVPEDGWYAGTEARYMGDIMADDENTAKAPSYTLIGL
FTGYKYNYHNLTVDLFGRVDNLFDKEYVGSVIVNESNGRYYEPAPGRNYGVGVNIAWRFE
>Mature_700_residues
MKIFSVRQTVLPALLALSPVVFAADEQTMIVSAAPQVVSELDTPAAVSVVDGEEMRLATPRINLSESLTSVPGLQVQNRQ
NYAQDLQLSIRGFGSRSTYGIRGIRLYVDGIPATMPDGQGQTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQ
QPPTIEASSYYGSFGSWRYGLKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQKNLANAKLGVRIDDASKLSLIFN
SVDIKADDPGGLTKAEWKANPQQAPRAEQYDTRKTIKQTQAGLRYERSLSSRDDMSVMMYAGERETTQYQSIPMAPQLNP
SHAGGVITLQRHYQGIDSRWTHRGELGVPVTFTTGLNYENMSENRKGYNNFRLNSGMPEYGQKGELRRDERNLMWNIDPY
LQTQWQLSEKLSLDAGVRYSSVWFDSNDHYITPGNGDDSGDASYHKWLPAGSLKYAMTDAWNIYLAAGRGFETPTINELS
YRADGQSGMNFGLKPSTNDTIEIGSKTRIGDGLLSLALFQTDTDDEIVVDSSSGGRTTYKNAGKTRRQGAELAWDQRFAG
DFRVNASWTWLDATYRSNVCNEQDCNGNRMPGIARNMGFASIGYVPEDGWYAGTEARYMGDIMADDENTAKAPSYTLIGL
FTGYKYNYHNLTVDLFGRVDNLFDKEYVGSVIVNESNGRYYEPAPGRNYGVGVNIAWRFE

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=700, Percent_Identity=98.8571428571429, Blast_Score=1434, Evalue=0.0,
Organism=Escherichia coli, GI1790743, Length=644, Percent_Identity=24.3788819875776, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI1788478, Length=155, Percent_Identity=32.9032258064516, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1787024, Length=253, Percent_Identity=28.0632411067194, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 77263; Mature: 77263

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFSVRQTVLPALLALSPVVFAADEQTMIVSAAPQVVSELDTPAAVSVVDGEEMRLATP
CCCHHHHHHHHHHHHHHCCEEEECCCCEEEEECCHHHHHHCCCCCEEEEECCCCEEEECC
RINLSESLTSVPGLQVQNRQNYAQDLQLSIRGFGSRSTYGIRGIRLYVDGIPATMPDGQG
CCCHHHHHHCCCCCEEECCCCHHHHEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCC
QTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQQPPTIEASSYYGSFGSWRYG
CCCCEEHHHCCCCHHHHCCHHHHCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCCEEEC
LKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQKNLANAKLGVRIDDASKLSLIFN
EEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCHHHHCCCEEEEEECCCCEEEEEEE
SVDIKADDPGGLTKAEWKANPQQAPRAEQYDTRKTIKQTQAGLRYERSLSSRDDMSVMMY
EEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEE
AGERETTQYQSIPMAPQLNPSHAGGVITLQRHYQGIDSRWTHRGELGVPVTFTTGLNYEN
ECCCCCCHHHCCCCCCCCCCCCCCCEEEEHHHHCCCCCCCCCCCCCCCCEEEECCCCCCC
MSENRKGYNNFRLNSGMPEYGQKGELRRDERNLMWNIDPYLQTQWQLSEKLSLDAGVRYS
CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCHHHCCHHHHHHHCCCCCCCEEE
SVWFDSNDHYITPGNGDDSGDASYHKWLPAGSLKYAMTDAWNIYLAAGRGFETPTINELS
EEEECCCCCEECCCCCCCCCCCCHHHCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCEE
YRADGQSGMNFGLKPSTNDTIEIGSKTRIGDGLLSLALFQTDTDDEIVVDSSSGGRTTYK
EECCCCCCCCCCCCCCCCCEEEECCCCCCCCHHEEEEEEECCCCCEEEEECCCCCCCCCC
NAGKTRRQGAELAWDQRFAGDFRVNASWTWLDATYRSNVCNEQDCNGNRMPGIARNMGFA
CCCCHHHCCCCCEECCCCCCCEEECCEEEEEECHHHCCCCCCCCCCCCCCCCHHHCCCCE
SIGYVPEDGWYAGTEARYMGDIMADDENTAKAPSYTLIGLFTGYKYNYHNLTVDLFGRVD
EECCCCCCCEECCCCCCEECCEEECCCCCCCCCCEEEEEEEECCEEEEEEEEEEEHHHHH
NLFDKEYVGSVIVNESNGRYYEPAPGRNYGVGVNIAWRFE
HHHHHHHCCEEEEECCCCCEECCCCCCCCEEEEEEEEEEC
>Mature Secondary Structure
MKIFSVRQTVLPALLALSPVVFAADEQTMIVSAAPQVVSELDTPAAVSVVDGEEMRLATP
CCCHHHHHHHHHHHHHHCCEEEECCCCEEEEECCHHHHHHCCCCCEEEEECCCCEEEECC
RINLSESLTSVPGLQVQNRQNYAQDLQLSIRGFGSRSTYGIRGIRLYVDGIPATMPDGQG
CCCHHHHHHCCCCCEEECCCCHHHHEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCC
QTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQQPPTIEASSYYGSFGSWRYG
CCCCEEHHHCCCCHHHHCCHHHHCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCCEEEC
LKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQKNLANAKLGVRIDDASKLSLIFN
EEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCHHHHCCCEEEEEECCCCEEEEEEE
SVDIKADDPGGLTKAEWKANPQQAPRAEQYDTRKTIKQTQAGLRYERSLSSRDDMSVMMY
EEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEE
AGERETTQYQSIPMAPQLNPSHAGGVITLQRHYQGIDSRWTHRGELGVPVTFTTGLNYEN
ECCCCCCHHHCCCCCCCCCCCCCCCEEEEHHHHCCCCCCCCCCCCCCCCEEEECCCCCCC
MSENRKGYNNFRLNSGMPEYGQKGELRRDERNLMWNIDPYLQTQWQLSEKLSLDAGVRYS
CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCHHHCCHHHHHHHCCCCCCCEEE
SVWFDSNDHYITPGNGDDSGDASYHKWLPAGSLKYAMTDAWNIYLAAGRGFETPTINELS
EEEECCCCCEECCCCCCCCCCCCHHHCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCEE
YRADGQSGMNFGLKPSTNDTIEIGSKTRIGDGLLSLALFQTDTDDEIVVDSSSGGRTTYK
EECCCCCCCCCCCCCCCCCEEEECCCCCCCCHHEEEEEEECCCCCEEEEECCCCCCCCCC
NAGKTRRQGAELAWDQRFAGDFRVNASWTWLDATYRSNVCNEQDCNGNRMPGIARNMGFA
CCCCHHHCCCCCEECCCCCCCEEECCEEEEEECHHHCCCCCCCCCCCCCCCCHHHCCCCE
SIGYVPEDGWYAGTEARYMGDIMADDENTAKAPSYTLIGLFTGYKYNYHNLTVDLFGRVD
EECCCCCCCEECCCCCCEECCEEECCCCCCCCCCEEEEEEEECCEEEEEEEEEEEHHHHH
NLFDKEYVGSVIVNESNGRYYEPAPGRNYGVGVNIAWRFE
HHHHHHHCCEEEEECCCCCEECCCCCCCCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]