Click here to switch to the map view.

The map label for this gene is ydcL

Identifier: 157160908

GI number: 157160908

Start: 1522887

End: 1523555

Strand: Direct

Name: ydcL

Synonym: EcHS_A1513

Alternate gene names: 157160908

Gene position: 1522887-1523555 (Clockwise)

Preceding gene: 157160907

Following gene: 157160909

Centisome position: 32.8

GC content: 44.84

Gene sequence:

>669_bases
ATGCGTACCACATCATTTGCGAAAGTTGCAGCTTTATGCGGCTTATTGGCTCTGTCTGGTTGTGCCTCTAAAATCACCCA
GCCAGATAAATATTCTGGTTTTTTAAACAATTACTCTGATTTAAAAGAAACAACCTCGGCTACAGGTAAACCTGTTTTAC
GTTGGGTAGACCCGAGTTTTGATCAAAGCAAATATGACAGCATCGTCTGGAACCCAATCACTTATTATCCGGTACCGAAA
CCGTCGACCCAGGTAGGGCAGAAAGTTCTGGATAAAATTTTGAACTATACCAACACCGAAATGAAAGAAGCGATAGCGCA
GCGTAAACCACTGGTTACCACCGCTGGGCCGCGTAGTCTGATTTTCCGTGGGGCCATTACCGGTGTAGATACCAGCAAAG
AAGGGCTGCAATTCTATGAAGTGGTTCCTGTTGCATTAGTGGTTGCGGGGACGCAAATGGCTACAGGCCACCGTACCATG
GATACTCGCCTCTATTTTGAAGGTGAGCTGATTGATGCAGCGACTAATAAACCGGTTATCAAAGTCGTTCGTCAGGGCGA
AGGTAAAGACCTGAATAACGAAAGTACGCCAATGGCTTTCGAAAATATTAAACAAGTTATTGATGACATGGCGACCGATG
CCACCATGTTTGACGTTAACAAAAAGTAG

Upstream 100 bases:

>100_bases
CTGAAAAATTTATTTTCACCAACACTTTTTTTGCCACAACACGAAGCGGCGCTTTTTGCTATAACTTAGAAAGTAATATA
ATCATCTCAGGAAACTATTC

Downstream 100 bases:

>100_bases
TTCCAGACGCGCCATCGTTAGATGGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGC
GCGGTTTTCCACCTGACCAG

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MRTTSFAKVAALCGLLALSGCASKITQPDKYSGFLNNYSDLKETTSATGKPVLRWVDPSFDQSKYDSIVWNPITYYPVPK
PSTQVGQKVLDKILNYTNTEMKEAIAQRKPLVTTAGPRSLIFRGAITGVDTSKEGLQFYEVVPVALVVAGTQMATGHRTM
DTRLYFEGELIDAATNKPVIKVVRQGEGKDLNNESTPMAFENIKQVIDDMATDATMFDVNKK

Sequences:

>Translated_222_residues
MRTTSFAKVAALCGLLALSGCASKITQPDKYSGFLNNYSDLKETTSATGKPVLRWVDPSFDQSKYDSIVWNPITYYPVPK
PSTQVGQKVLDKILNYTNTEMKEAIAQRKPLVTTAGPRSLIFRGAITGVDTSKEGLQFYEVVPVALVVAGTQMATGHRTM
DTRLYFEGELIDAATNKPVIKVVRQGEGKDLNNESTPMAFENIKQVIDDMATDATMFDVNKK
>Mature_222_residues
MRTTSFAKVAALCGLLALSGCASKITQPDKYSGFLNNYSDLKETTSATGKPVLRWVDPSFDQSKYDSIVWNPITYYPVPK
PSTQVGQKVLDKILNYTNTEMKEAIAQRKPLVTTAGPRSLIFRGAITGVDTSKEGLQFYEVVPVALVVAGTQMATGHRTM
DTRLYFEGELIDAATNKPVIKVVRQGEGKDLNNESTPMAFENIKQVIDDMATDATMFDVNKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable)

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787701, Length=222, Percent_Identity=100, Blast_Score=461, Evalue=1e-131,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDCL_ECO57 (P64452)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   C85735
- PIR:   D90883
- RefSeq:   NP_287729.1
- RefSeq:   NP_310063.1
- EnsemblBacteria:   EBESCT00000028684
- EnsemblBacteria:   EBESCT00000059929
- GeneID:   917234
- GeneID:   960969
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z2287
- KEGG:   ecs:ECs2036
- GeneTree:   EBGT00050000010061
- HOGENOM:   HBG416152
- OMA:   MRWIDPK
- ProtClustDB:   CLSK880074
- BioCyc:   ECOL83334:ECS2036-MONOMER
- InterPro:   IPR021747

Pfam domain/function: PF11769 DUF3313

EC number: NA

Molecular weight: Translated: 24427; Mature: 24427

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTTSFAKVAALCGLLALSGCASKITQPDKYSGFLNNYSDLKETTSATGKPVLRWVDPSF
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHCCCCCCEEEECCCCC
DQSKYDSIVWNPITYYPVPKPSTQVGQKVLDKILNYTNTEMKEAIAQRKPLVTTAGPRSL
CCHHCCCEEECCEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEECCCCHHH
IFRGAITGVDTSKEGLQFYEVVPVALVVAGTQMATGHRTMDTRLYFEGELIDAATNKPVI
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCCCCCCEEEEEECEEECCCCCCHHH
KVVRQGEGKDLNNESTPMAFENIKQVIDDMATDATMFDVNKK
HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCC
>Mature Secondary Structure
MRTTSFAKVAALCGLLALSGCASKITQPDKYSGFLNNYSDLKETTSATGKPVLRWVDPSF
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHCCCCCCEEEECCCCC
DQSKYDSIVWNPITYYPVPKPSTQVGQKVLDKILNYTNTEMKEAIAQRKPLVTTAGPRSL
CCHHCCCEEECCEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEECCCCHHH
IFRGAITGVDTSKEGLQFYEVVPVALVVAGTQMATGHRTMDTRLYFEGELIDAATNKPVI
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCCCCCCEEEEEECEEECCCCCCHHH
KVVRQGEGKDLNNESTPMAFENIKQVIDDMATDATMFDVNKK
HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796