Definition | Escherichia coli HS, complete genome. |
---|---|
Accession | NC_009800 |
Length | 4,643,538 |
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The map label for this gene is ycgN [C]
Identifier: 157160684
GI number: 157160684
Start: 1277264
End: 1277725
Strand: Direct
Name: ycgN [C]
Synonym: EcHS_A1281
Alternate gene names: 157160684
Gene position: 1277264-1277725 (Clockwise)
Preceding gene: 157160683
Following gene: 157160686
Centisome position: 27.51
GC content: 48.05
Gene sequence:
>462_bases ATGGCGGAACACCTGATGAGCGATGTACCTTTCTGGCAAAGTAAAACCCTGGACGAAATGAGCGATGCGGAATGGGAGTC GTTGTGTGATGGTTGCGGTCAGTGTTGCCTGCATAAACTGATGGATGAAGACACCGACGAAATCTACTTCACTAACGTCG CCTGTCGCCAGCTCAATATTAAAACCTGTCAATGTCGGAACTACGAACGTCGTTTCGAGTTTGAACCCGACTGCATTAAA TTAACCCGTGAAAATCTGCCAACATTCGAATGGCTGCCAATGACCTGCGCTTATCGGTTGCTGGCGGAAGGTAAAGATTT ACCTGCGTGGCATCCGCTACTTACGGGTTCGAAAGCGGCAATGCATGGTGAACGTATCTCTGTGCGTCATATCGCAGTGA AAGAATCAGAAGTGATTGACTGGCAGGATCATATCTTAAATAAACCTGACTGGGCGCAGTGA
Upstream 100 bases:
>100_bases TCTTTGACAACTCGCGTTTTGTAATACTTTTTGCCGCCTGAAAGCGGCGGCAAAACTTGCATCGCTGTGCCAGACTGGTT ATAAGGTGCGTTTTAACGTA
Downstream 100 bases:
>100_bases TAAATTTAATAGATGTTGATGGGGGCTTTCTTAATATACGTCTGGATGCTCGCCATTTCGTAGCCCTGTTTTTGAAAGCG CTCTGTCATAATGAGAGTTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 153; Mature: 152
Protein sequence:
>153_residues MAEHLMSDVPFWQSKTLDEMSDAEWESLCDGCGQCCLHKLMDEDTDEIYFTNVACRQLNIKTCQCRNYERRFEFEPDCIK LTRENLPTFEWLPMTCAYRLLAEGKDLPAWHPLLTGSKAAMHGERISVRHIAVKESEVIDWQDHILNKPDWAQ
Sequences:
>Translated_153_residues MAEHLMSDVPFWQSKTLDEMSDAEWESLCDGCGQCCLHKLMDEDTDEIYFTNVACRQLNIKTCQCRNYERRFEFEPDCIK LTRENLPTFEWLPMTCAYRLLAEGKDLPAWHPLLTGSKAAMHGERISVRHIAVKESEVIDWQDHILNKPDWAQ >Mature_152_residues AEHLMSDVPFWQSKTLDEMSDAEWESLCDGCGQCCLHKLMDEDTDEIYFTNVACRQLNIKTCQCRNYERRFEFEPDCIKL TRENLPTFEWLPMTCAYRLLAEGKDLPAWHPLLTGSKAAMHGERISVRHIAVKESEVIDWQDHILNKPDWAQ
Specific function: Unknown
COG id: COG2983
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0260 family [H]
Homologues:
Organism=Escherichia coli, GI145693117, Length=153, Percent_Identity=100, Blast_Score=322, Evalue=7e-90,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008228 - InterPro: IPR005358 [H]
Pfam domain/function: PF03692 UPF0153 [H]
EC number: NA
Molecular weight: Translated: 17910; Mature: 17779
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.9 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 9.8 %Cys+Met (Translated Protein) 5.9 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 9.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEHLMSDVPFWQSKTLDEMSDAEWESLCDGCGQCCLHKLMDEDTDEIYFTNVACRQLNI CCHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHEECCC KTCQCRNYERRFEFEPDCIKLTRENLPTFEWLPMTCAYRLLAEGKDLPAWHPLLTGSKAA CEECCCCHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHCCCHHH MHGERISVRHIAVKESEVIDWQDHILNKPDWAQ HCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCC >Mature Secondary Structure AEHLMSDVPFWQSKTLDEMSDAEWESLCDGCGQCCLHKLMDEDTDEIYFTNVACRQLNI CHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHEECCC KTCQCRNYERRFEFEPDCIKLTRENLPTFEWLPMTCAYRLLAEGKDLPAWHPLLTGSKAA CEECCCCHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHCCCHHH MHGERISVRHIAVKESEVIDWQDHILNKPDWAQ HCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA